Cow genome map
| Conread name: | Ss1.1-rthg14_d21.5 |
| Conread position: | 1-189 |
| Cow position: | chr23:2440790-2440977 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 18, 32 |
| Conread position: | 1-220 |
| Cow position: | chr23:38581793-38581573 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 15, 50 |
| Conread position: | 1-222 |
| Cow position: | chr23:4754169-4753939 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 18, 32 |
| Conread position: | 1-253 |
| Cow position: | chr23:8287097-8286844 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 189 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 18, 87 |
| Conread position: | 1-257 |
| Cow position: | chr23:7369590-7369340 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 18, 84 |
| Conread position: | 1-271 |
| Cow position: | chr23:5873512-5873783 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 191 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 20, 111 |
| Conread position: | 1-285 |
| Cow position: | chr23:618404-618678 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 18, 39 |
| Conread position: | 1-285 |
| Cow position: | chr23:15876503-15876780 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 1-295 |
| Cow position: | chr23:2717455-2717165 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 21, 101 |
| Conread position: | 1-295 |
| Cow position: | chr23:11077148-11077437 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 1-295 |
| Cow position: | chr23:19451176-19450885 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 79 |
| Conread position: | 1-845 |
| Cow position: | chr23:1401472-1402332 (view UCSC Genome Browser custom track) |
| Alignm length: | 886 |
| Alignm identity: | 575 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 15 |
| Conread position: | 2-203 |
| Cow position: | chr23:13512176-13511973 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 15, 47 |
| Conread position: | 2-294 |
| Cow position: | chr23:16614369-16614667 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 2-295 |
| Cow position: | chr23:36030311-36030601 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 186 |
| Conread position: | 2-296 |
| Cow position: | chr23:29451286-29451570 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 285, 16 |
| Conread position: | 3-219 |
| Cow position: | chr23:25534381-25534165 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 17, 37 |
| Conread position: | 3-224 |
| Cow position: | chr23:5739294-5739513 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 16, 108 |
| Conread position: | 3-251 |
| Cow position: | chr23:18127218-18127463 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 13, 24 |
| Conread position: | 3-295 |
| Cow position: | chr23:16498176-16498457 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 3-852 |
| Cow position: | chr23:2342143-2341245 (view UCSC Genome Browser custom track) |
| Alignm length: | 909 |
| Alignm identity: | 607 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 53 |
| Conread position: | 5-270 |
| Cow position: | chr23:4818083-4817818 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 14, 90 |
| Conread position: | 5-295 |
| Cow position: | chr23:4889747-4889457 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 5-295 |
| Cow position: | chr23:15218839-15219132 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 6-681 |
| Cow position: | chr23:2794195-2794908 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 346 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 13, 545 |
| Conread position: | 7-286 |
| Cow position: | chr23:965434-965715 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 12, 145 |
| Conread position: | 7-295 |
| Cow position: | chr23:2026021-2026307 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 180 |
| Conread position: | 7-295 |
| Cow position: | chr23:15526629-15526340 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 155 |
| Conread position: | 7-295 |
| Cow position: | chr23:20155152-20155447 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 7-295 |
| Cow position: | chr23:22146247-22146526 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 10-253 |
| Cow position: | chr23:1956953-1956716 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 9, 102 |
| Conread position: | 10-281 |
| Cow position: | chr23:14963989-14964258 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 9, 197 |
| Conread position: | 10-285 |
| Cow position: | chr23:2758946-2758669 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 10-285 |
| Cow position: | chr23:3880029-3880300 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 10-294 |
| Cow position: | chr23:2780912-2781200 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 9, 30 |
| Conread position: | 10-294 |
| Cow position: | chr23:25682884-25683167 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 33, 92 |
| Conread position: | 10-295 |
| Cow position: | chr23:4639567-4639850 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 9, 71 |
| Conread position: | 10-295 |
| Cow position: | chr23:11779841-11779559 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 252 |
| Conread position: | 10-295 |
| Cow position: | chr23:15178132-15177845 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 217 |
| Conread position: | 17-239 |
| Cow position: | chr23:29402671-29402893 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-273 |
| Cow position: | chr23:14262899-14262649 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 16, 42 |
| Conread position: | 18-223 |
| Cow position: | chr23:16236409-16236614 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 181, 31 |
| Conread position: | 18-267 |
| Cow position: | chr23:23171548-23171299 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-295 |
| Cow position: | chr23:2576475-2576197 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 22, 173 |
| Conread position: | 18-295 |
| Cow position: | chr23:19490590-19490312 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 29, 174 |
| Conread position: | 19-242 |
| Cow position: | chr23:28025708-28025494 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 39, 53 |
| Conread position: | 22-295 |
| Cow position: | chr23:27971572-27971312 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 26-211 |
| Cow position: | chr23:26159685-26159873 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 33-209 |
| Cow position: | chr23:17186749-17186573 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-295 |
| Cow position: | chr23:6220276-6220024 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 39-211 |
| Cow position: | chr23:7045416-7045588 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 76, 36 |
| Conread position: | 40-852 |
| Cow position: | chr23:26837642-26836820 (view UCSC Genome Browser custom track) |
| Alignm length: | 847 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 44 |
| Conread position: | 41-267 |
| Cow position: | chr23:19949574-19949800 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 41-294 |
| Cow position: | chr23:27400533-27400280 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 43-262 |
| Cow position: | chr23:948773-948986 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 64, 72 |
| Conread position: | 48-295 |
| Cow position: | chr23:14778149-14778390 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 61-295 |
| Cow position: | chr23:15041740-15041972 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 53, 49 |
| Conread position: | 64-294 |
| Cow position: | chr23:7337124-7336889 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 189, 122 |
| Conread position: | 77-295 |
| Cow position: | chr23:28914384-28914167 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 87-806 |
| Cow position: | chr23:13510630-13509845 (view UCSC Genome Browser custom track) |
| Alignm length: | 794 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 81 |
| Conread position: | 89-267 |
| Cow position: | chr23:4360785-4360608 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 95-754 |
| Cow position: | chr23:14973593-14974307 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 15 |
| Conread position: | 96-401 |
| Cow position: | chr23:22943383-22943696 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 128, 182 |
| Conread position: | 293-730 |
| Cow position: | chr23:31447567-31447088 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 311 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 54, 272 |
| Conread position: | 293-742 |
| Cow position: | chr23:2312491-2312979 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 317 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 133 |
| Conread position: | 293-754 |
| Cow position: | chr23:15526319-15525867 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 91, 103 |
| Conread position: | 293-842 |
| Cow position: | chr23:29451590-29452155 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 359 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 60, 48 |
| Conread position: | 293-869 |
| Cow position: | chr23:16614685-16615296 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 273 |
| Conread position: | 304-869 |
| Cow position: | chr23:4753303-4752745 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 365 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 7, 20 |
| Conread position: | 364-850 |
| Cow position: | chr23:15877104-15877604 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 9 |
| Conread position: | 372-855 |
| Cow position: | chr23:19949941-19950431 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 50, 38 |
| Conread position: | 409-749 |
| Cow position: | chr23:25683436-25683780 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 13, 42 |
| Conread position: | 433-754 |
| Cow position: | chr23:16616257-16616589 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 50, 102 |
| Conread position: | 444-714 |
| Cow position: | chr23:17785750-17786033 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 92 |
| Conread position: | 444-730 |
| Cow position: | chr23:23830532-23830239 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 7, 92 |
| Conread position: | 444-742 |
| Cow position: | chr23:28217862-28217551 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 7, 92 |
| Conread position: | 444-754 |
| Cow position: | chr23:36030800-36031120 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 40, 89 |
| Conread position: | 446-685 |
| Cow position: | chr23:4817591-4817339 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 37, 95 |
| Conread position: | 448-736 |
| Cow position: | chr23:15177644-15177345 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 95 |
| Conread position: | 449-862 |
| Cow position: | chr23:7046078-7046512 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 299 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 34, 94 |
| Conread position: | 452-752 |
| Cow position: | chr23:3014963-3014647 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 90 |
| Conread position: | 455-748 |
| Cow position: | chr23:4435019-4434714 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 27, 80 |
| Conread position: | 456-880 |
| Cow position: | chr23:17186254-17185814 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 82 |
| Conread position: | 481-842 |
| Cow position: | chr23:22146718-22147085 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 84, 55 |
| Conread position: | 633-866 |
| Cow position: | chr23:19331635-19331871 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 113, 60 |
Show alignments to all cow chromosomes.