Cow genome map

Conread name: Ss1.1-rthg14_d21.5

Conread position: 1-189
Cow position:
Alignm length: 190
Alignm identity: 142
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 18, 32

Conread position: 1-220
Cow position:
Alignm length: 225
Alignm identity: 168
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 15, 50

Conread position: 1-222
Cow position:
Alignm length: 233
Alignm identity: 165
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 18, 32

Conread position: 1-253
Cow position:
Alignm length: 257
Alignm identity: 189
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 18, 87

Conread position: 1-257
Cow position:
Alignm length: 258
Alignm identity: 180
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 18, 84

Conread position: 1-271
Cow position:
Alignm length: 273
Alignm identity: 191
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 20, 111

Conread position: 1-285
Cow position:
Alignm length: 286
Alignm identity: 196
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 18, 39

Conread position: 1-285
Cow position:
Alignm length: 288
Alignm identity: 206
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 18, 41

Conread position: 1-295
Cow position:
Alignm length: 301
Alignm identity: 209
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 21, 101

Conread position: 1-295
Cow position:
Alignm length: 297
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 26

Conread position: 1-295
Cow position:
Alignm length: 296
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 79

Conread position: 1-845
Cow position:
Alignm length: 886
Alignm identity: 575
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 15

Conread position: 2-203
Cow position:
Alignm length: 206
Alignm identity: 153
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 15, 47

Conread position: 2-294
Cow position:
Alignm length: 302
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 12

Conread position: 2-295
Cow position:
Alignm length: 296
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 186

Conread position: 2-296
Cow position:
Alignm length: 296
Alignm identity: 206
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 285, 16

Conread position: 3-219
Cow position:
Alignm length: 219
Alignm identity: 155
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 17, 37

Conread position: 3-224
Cow position:
Alignm length: 223
Alignm identity: 161
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 16, 108

Conread position: 3-251
Cow position:
Alignm length: 251
Alignm identity: 166
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 13, 24

Conread position: 3-295
Cow position:
Alignm length: 293
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 3-852
Cow position:
Alignm length: 909
Alignm identity: 607
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 53

Conread position: 5-270
Cow position:
Alignm length: 268
Alignm identity: 194
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 14, 90

Conread position: 5-295
Cow position:
Alignm length: 294
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 35

Conread position: 5-295
Cow position:
Alignm length: 294
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 6-681
Cow position:
Alignm length: 717
Alignm identity: 346
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 13, 545

Conread position: 7-286
Cow position:
Alignm length: 283
Alignm identity: 202
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 12, 145

Conread position: 7-295
Cow position:
Alignm length: 290
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 180

Conread position: 7-295
Cow position:
Alignm length: 291
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 155

Conread position: 7-295
Cow position:
Alignm length: 296
Alignm identity: 203
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 12, 0

Conread position: 7-295
Cow position:
Alignm length: 289
Alignm identity: 199
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 31, 0

Conread position: 10-253
Cow position:
Alignm length: 245
Alignm identity: 175
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 9, 102

Conread position: 10-281
Cow position:
Alignm length: 273
Alignm identity: 193
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 9, 197

Conread position: 10-285
Cow position:
Alignm length: 278
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-285
Cow position:
Alignm length: 277
Alignm identity: 196
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 9, 38

Conread position: 10-294
Cow position:
Alignm length: 292
Alignm identity: 207
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 9, 30

Conread position: 10-294
Cow position:
Alignm length: 290
Alignm identity: 198
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 33, 92

Conread position: 10-295
Cow position:
Alignm length: 288
Alignm identity: 206
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 9, 71

Conread position: 10-295
Cow position:
Alignm length: 287
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 252

Conread position: 10-295
Cow position:
Alignm length: 289
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 217

Conread position: 17-239
Cow position:
Alignm length: 223
Alignm identity: 148
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 17-273
Cow position:
Alignm length: 259
Alignm identity: 187
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 16, 42

Conread position: 18-223
Cow position:
Alignm length: 208
Alignm identity: 140
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 181, 31

Conread position: 18-267
Cow position:
Alignm length: 250
Alignm identity: 169
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 18-295
Cow position:
Alignm length: 280
Alignm identity: 199
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 22, 173

Conread position: 18-295
Cow position:
Alignm length: 284
Alignm identity: 201
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 29, 174

Conread position: 19-242
Cow position:
Alignm length: 226
Alignm identity: 161
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 39, 53

Conread position: 22-295
Cow position:
Alignm length: 274
Alignm identity: 187
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 16, 0

Conread position: 26-211
Cow position:
Alignm length: 189
Alignm identity: 145
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 28, 0

Conread position: 33-209
Cow position:
Alignm length: 177
Alignm identity: 132
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 36-295
Cow position:
Alignm length: 260
Alignm identity: 187
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 95, 0

Conread position: 39-211
Cow position:
Alignm length: 175
Alignm identity: 130
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 76, 36

Conread position: 40-852
Cow position:
Alignm length: 847
Alignm identity: 558
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 44

Conread position: 41-267
Cow position:
Alignm length: 227
Alignm identity: 158
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 41-294
Cow position:
Alignm length: 254
Alignm identity: 177
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 43-262
Cow position:
Alignm length: 221
Alignm identity: 160
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 64, 72

Conread position: 48-295
Cow position:
Alignm length: 248
Alignm identity: 174
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 87, 0

Conread position: 61-295
Cow position:
Alignm length: 236
Alignm identity: 165
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 53, 49

Conread position: 64-294
Cow position:
Alignm length: 241
Alignm identity: 169
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 189, 122

Conread position: 77-295
Cow position:
Alignm length: 219
Alignm identity: 160
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 192, 0

Conread position: 87-806
Cow position:
Alignm length: 794
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 81

Conread position: 89-267
Cow position:
Alignm length: 179
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 98, 0

Conread position: 95-754
Cow position:
Alignm length: 724
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 15

Conread position: 96-401
Cow position:
Alignm length: 316
Alignm identity: 208
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 128, 182

Conread position: 293-730
Cow position:
Alignm length: 482
Alignm identity: 311
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 54, 272

Conread position: 293-742
Cow position:
Alignm length: 494
Alignm identity: 317
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 51, 133

Conread position: 293-754
Cow position:
Alignm length: 474
Alignm identity: 303
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 91, 103

Conread position: 293-842
Cow position:
Alignm length: 571
Alignm identity: 359
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 60, 48

Conread position: 293-869
Cow position:
Alignm length: 618
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 273

Conread position: 304-869
Cow position:
Alignm length: 580
Alignm identity: 365
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 7, 20

Conread position: 364-850
Cow position:
Alignm length: 511
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 9

Conread position: 372-855
Cow position:
Alignm length: 502
Alignm identity: 319
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 50, 38

Conread position: 409-749
Cow position:
Alignm length: 355
Alignm identity: 240
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 13, 42

Conread position: 433-754
Cow position:
Alignm length: 336
Alignm identity: 225
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 50, 102

Conread position: 444-714
Cow position:
Alignm length: 286
Alignm identity: 189
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 7, 92

Conread position: 444-730
Cow position:
Alignm length: 297
Alignm identity: 197
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 7, 92

Conread position: 444-742
Cow position:
Alignm length: 314
Alignm identity: 210
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 7, 92

Conread position: 444-754
Cow position:
Alignm length: 325
Alignm identity: 224
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 40, 89

Conread position: 446-685
Cow position:
Alignm length: 255
Alignm identity: 174
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 37, 95

Conread position: 448-736
Cow position:
Alignm length: 303
Alignm identity: 198
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 35, 95

Conread position: 449-862
Cow position:
Alignm length: 442
Alignm identity: 299
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 34, 94

Conread position: 452-752
Cow position:
Alignm length: 321
Alignm identity: 214
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 90

Conread position: 455-748
Cow position:
Alignm length: 308
Alignm identity: 207
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 27, 80

Conread position: 456-880
Cow position:
Alignm length: 447
Alignm identity: 283
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 82

Conread position: 481-842
Cow position:
Alignm length: 374
Alignm identity: 238
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 84, 55

Conread position: 633-866
Cow position:
Alignm length: 240
Alignm identity: 172
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 113, 60

Show alignments to all cow chromosomes.