Cow genome map

Conread name: Ss1.1-rthg14_d21.5

Conread position: 1-218
Cow position: chr24:36709524-36709299 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 17, 0

Conread position: 1-221
Cow position: chr24:6129975-6129766 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 18, 26

Conread position: 1-231
Cow position: chr24:14881457-14881678 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 17, 63

Conread position: 1-245
Cow position: chr24:16097702-16097461 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 171
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 18, 59

Conread position: 1-267
Cow position: chr24:12205154-12205422 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 189
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 18, 95

Conread position: 1-285
Cow position: chr24:6332540-6332827 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 202
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 17, 185

Conread position: 1-285
Cow position: chr24:38638687-38638406 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 1-293
Cow position: chr24:6060049-6059760 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 203
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 18, 190

Conread position: 1-293
Cow position: chr24:8151125-8151403 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 214
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 18, 78

Conread position: 1-295
Cow position: chr24:36558621-36558915 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 210
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 17, 47

Conread position: 3-267
Cow position: chr24:6023957-6024218 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 185
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 16, 82

Conread position: 3-295
Cow position: chr24:14871165-14871456 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 87

Conread position: 3-295
Cow position: chr24:25467475-25467759 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 205
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 17, 50

Conread position: 3-295
Cow position: chr24:29305165-29305463 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 196
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 16, 0

Conread position: 5-225
Cow position: chr24:6142235-6142022 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 156
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 14, 110

Conread position: 5-285
Cow position: chr24:9545211-9544932 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 149

Conread position: 5-285
Cow position: chr24:22972239-22971958 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 6-298
Cow position: chr24:6659350-6659637 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 196
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 13, 112

Conread position: 7-295
Cow position: chr24:147466-147752 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 41

Conread position: 10-295
Cow position: chr24:6435625-6435336 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 199
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 9, 93

Conread position: 10-295
Cow position: chr24:13233399-13233109 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 197
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 10, 73

Conread position: 10-295
Cow position: chr24:19834538-19834249 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-295
Cow position: chr24:29188434-29188148 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 15-192
Cow position: chr24:43060428-43060255 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 23, 6

Conread position: 18-213
Cow position: chr24:13044497-13044692 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 134
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 18-267
Cow position: chr24:9187598-9187848 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 174
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 170, 0

Conread position: 18-285
Cow position: chr24:12143204-12143469 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 95

Conread position: 18-294
Cow position: chr24:12087340-12087065 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 197
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 24, 171

Conread position: 18-295
Cow position: chr24:4414397-4414674 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 138

Conread position: 18-295
Cow position: chr24:6327897-6328174 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 189
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 18-295
Cow position: chr24:12334624-12334901 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-295
Cow position: chr24:12699673-12699959 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 183
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 92, 0

Conread position: 18-295
Cow position: chr24:23504730-23505007 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 186
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 18-381
Cow position: chr24:9090933-9091295 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 21

Conread position: 18-381
Cow position: chr24:17695848-17696223 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 333

Conread position: 19-295
Cow position: chr24:11866115-11866391 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 185
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 20-252
Cow position: chr24:12109571-12109807 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 160
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 37, 0

Conread position: 20-295
Cow position: chr24:40656190-40655908 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 188
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 5, 0

Conread position: 22-285
Cow position: chr24:12128937-12129200 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 185
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 32, 78

Conread position: 22-295
Cow position: chr24:6407160-6406887 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 24-242
Cow position: chr24:14389413-14389632 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 161
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 86, 17

Conread position: 24-283
Cow position: chr24:33934499-33934242 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 183
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 6, 0

Conread position: 24-295
Cow position: chr24:7089841-7090113 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 201
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 48, 39

Conread position: 25-295
Cow position: chr24:19702610-19702342 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 182
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 163, 85

Conread position: 26-246
Cow position: chr24:27147835-27147617 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 163
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 21, 0

Conread position: 26-294
Cow position: chr24:34494031-34494302 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 191
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 259, 0

Conread position: 26-856
Cow position: chr24:6049671-6048828 (view UCSC Genome Browser custom track)
Alignm length: 864
Alignm identity: 577
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 105

Conread position: 33-285
Cow position: chr24:14302600-14302348 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 183
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 61, 124

Conread position: 33-295
Cow position: chr24:37199895-37200150 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 179
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 72, 6

Conread position: 41-225
Cow position: chr24:14278397-14278577 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 66, 61

Conread position: 41-237
Cow position: chr24:14754783-14754587 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 43-270
Cow position: chr24:16876088-16876315 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 156
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 73, 15

Conread position: 47-267
Cow position: chr24:43814869-43814649 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 150
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 53-294
Cow position: chr24:29183250-29183005 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 228, 0

Conread position: 56-228
Cow position: chr24:31114746-31114573 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 9, 67

Conread position: 77-267
Cow position: chr24:12484241-12484432 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 134
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 43, 0

Conread position: 90-285
Cow position: chr24:13189234-13189039 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 136
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 108, 115

Conread position: 92-294
Cow position: chr24:40193573-40193370 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 192, 0

Conread position: 98-252
Cow position: chr24:16084093-16083939 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 101-285
Cow position: chr24:14383543-14383725 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 27, 0

Conread position: 101-298
Cow position: chr24:28210028-28210232 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 116, 0

Conread position: 103-221
Cow position: chr24:6545102-6545220 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 16, 6

Conread position: 127-295
Cow position: chr24:8031316-8031148 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 293-730
Cow position: chr24:12484481-12484958 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 316
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 59, 47

Conread position: 293-730
Cow position: chr24:44018370-44017892 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 312
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 58, 119

Conread position: 293-757
Cow position: chr24:6646538-6646033 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 326
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 47, 272

Conread position: 293-870
Cow position: chr24:38638376-38637761 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 399
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 9, 260

Conread position: 296-862
Cow position: chr24:36558941-36559535 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 62

Conread position: 363-871
Cow position: chr24:14280349-14280862 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 330
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 47, 119

Conread position: 372-685
Cow position: chr24:6084810-6084474 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 223
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 173

Conread position: 372-742
Cow position: chr24:13188913-13188520 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 257
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 187

Conread position: 374-736
Cow position: chr24:22793917-22793524 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 256
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 36, 175

Conread position: 377-721
Cow position: chr24:6024367-6024735 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 240
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 33, 172

Conread position: 377-742
Cow position: chr24:43814501-43814111 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 261
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 33, 172

Conread position: 438-840
Cow position: chr24:14872296-14872709 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 10

Conread position: 441-692
Cow position: chr24:12796563-12796812 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 177
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 157, 26

Conread position: 441-871
Cow position: chr24:6669485-6669929 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 62

Conread position: 442-871
Cow position: chr24:16472560-16472115 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 110

Conread position: 444-710
Cow position: chr24:7062052-7061772 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 194
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 7, 92

Conread position: 444-735
Cow position: chr24:29305664-29305969 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 202
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 7, 257

Conread position: 444-736
Cow position: chr24:40549523-40549226 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 197
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 7, 92

Conread position: 444-742
Cow position: chr24:9188077-9188385 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 207
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 7, 105

Conread position: 444-742
Cow position: chr24:33738681-33738993 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 210
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 7, 98

Conread position: 446-685
Cow position: chr24:6659840-6660092 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 177
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 33, 89

Conread position: 446-754
Cow position: chr24:12086858-12086541 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 218
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 37, 68

Conread position: 448-732
Cow position: chr24:12232329-12232611 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 191
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 29, 93

Conread position: 466-862
Cow position: chr24:14334100-14333707 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 265
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 82, 64

Conread position: 514-866
Cow position: chr24:7090580-7090954 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 262
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 42, 22

Conread position: 529-720
Cow position: chr24:30900562-30900753 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 10, 93

Conread position: 600-797
Cow position: chr24:17371908-17372107 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 142
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 35, 13

Conread position: 606-870
Cow position: chr24:32332513-32332245 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 196
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 24, 92

Show alignments to all cow chromosomes.