Cow genome map
| Conread name: | Ss1.1-rthg14_d21.5 |
| Conread position: | 1-272 |
| Cow position: | chr25:27525030-27525297 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 80 |
| Conread position: | 1-272 |
| Cow position: | chr25:33259531-33259267 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 1-281 |
| Cow position: | chr25:3377120-3377395 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 203, 18 |
| Conread position: | 1-295 |
| Cow position: | chr25:17559436-17559733 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 207 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 18, 86 |
| Conread position: | 2-253 |
| Cow position: | chr25:18305260-18305011 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 19, 51 |
| Conread position: | 3-232 |
| Cow position: | chr25:18177809-18177579 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 16, 221 |
| Conread position: | 3-277 |
| Cow position: | chr25:12757974-12758252 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 67 |
| Conread position: | 3-283 |
| Cow position: | chr25:36636568-36636855 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 7-269 |
| Cow position: | chr25:12941566-12941825 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 192 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 8-295 |
| Cow position: | chr25:24659102-24659381 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 10-267 |
| Cow position: | chr25:20774273-20774528 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 9, 31 |
| Conread position: | 10-267 |
| Cow position: | chr25:27021482-27021738 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 9, 30 |
| Conread position: | 10-270 |
| Cow position: | chr25:26880286-26880032 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 9, 23 |
| Conread position: | 10-285 |
| Cow position: | chr25:18888639-18888915 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 10-293 |
| Cow position: | chr25:13782138-13781854 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 39 |
| Conread position: | 10-294 |
| Cow position: | chr25:17588452-17588741 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 9, 60 |
| Conread position: | 10-294 |
| Cow position: | chr25:22148644-22148359 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 10-295 |
| Cow position: | chr25:20630739-20630448 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 10-295 |
| Cow position: | chr25:25507806-25507522 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 178 |
| Conread position: | 10-840 |
| Cow position: | chr25:24216357-24217218 (view UCSC Genome Browser custom track) |
| Alignm length: | 880 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 61 |
| Conread position: | 12-299 |
| Cow position: | chr25:24947011-24947293 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 112, 58 |
| Conread position: | 15-245 |
| Cow position: | chr25:37974107-37973883 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 96 |
| Conread position: | 15-253 |
| Cow position: | chr25:39557337-39557575 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 18, 25 |
| Conread position: | 17-222 |
| Cow position: | chr25:11830987-11831189 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 63, 31 |
| Conread position: | 17-249 |
| Cow position: | chr25:35086855-35087083 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 106, 29 |
| Conread position: | 18-218 |
| Cow position: | chr25:37466336-37466138 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 132 |
| Conread position: | 18-267 |
| Cow position: | chr25:18192667-18192917 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 34, 124 |
| Conread position: | 20-295 |
| Cow position: | chr25:18273676-18273950 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 22, 57 |
| Conread position: | 26-251 |
| Cow position: | chr25:18325824-18326046 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 168, 13 |
| Conread position: | 26-293 |
| Cow position: | chr25:19407885-19407616 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 72, 167 |
| Conread position: | 41-295 |
| Cow position: | chr25:34345940-34346200 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 47-295 |
| Cow position: | chr25:18450391-18450138 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 156, 185 |
| Conread position: | 293-730 |
| Cow position: | chr25:6172697-6172218 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 312 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 58, 272 |
| Conread position: | 293-736 |
| Cow position: | chr25:32580752-32580273 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 325 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 59, 47 |
| Conread position: | 296-869 |
| Cow position: | chr25:18254215-18254785 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 385 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 126, 77 |
| Conread position: | 297-671 |
| Cow position: | chr25:40918378-40918780 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 65, 254 |
| Conread position: | 372-742 |
| Cow position: | chr25:17588854-17589251 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 260 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 38, 177 |
| Conread position: | 375-672 |
| Cow position: | chr25:33258339-33258039 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 9, 5 |
| Conread position: | 444-730 |
| Cow position: | chr25:13550416-13550715 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 98 |
| Conread position: | 444-742 |
| Cow position: | chr25:18194486-18194795 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 7, 40 |
| Conread position: | 444-747 |
| Cow position: | chr25:24659868-24659557 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 33, 93 |
| Conread position: | 450-866 |
| Cow position: | chr25:11932491-11932928 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 301 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 33, 49 |
| Conread position: | 466-857 |
| Cow position: | chr25:3377764-3378153 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 266 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 270, 51 |
| Conread position: | 536-869 |
| Cow position: | chr25:18094722-18094383 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 18, 120 |
| Conread position: | 633-858 |
| Cow position: | chr25:20495146-20494923 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 120, 66 |
Show alignments to all cow chromosomes.