Cow genome map
| Conread name: | Ss1.1-rthg14_d21.5 |
| Conread position: | 1-295 |
| Cow position: | chr26:4604048-4604346 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 19, 65 |
| Conread position: | 2-245 |
| Cow position: | chr26:8863145-8863385 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 17, 120 |
| Conread position: | 2-248 |
| Cow position: | chr26:14507442-14507677 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 17, 31 |
| Conread position: | 3-248 |
| Cow position: | chr26:30783885-30783632 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 15, 245 |
| Conread position: | 3-286 |
| Cow position: | chr26:11031291-11031011 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 19, 82 |
| Conread position: | 3-295 |
| Cow position: | chr26:12587432-12587730 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 3-295 |
| Cow position: | chr26:15143632-15143925 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 5-160 |
| Cow position: | chr26:17325199-17325040 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 14, 148 |
| Conread position: | 5-295 |
| Cow position: | chr26:17395785-17396076 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 288 |
| Conread position: | 7-295 |
| Cow position: | chr26:30588245-30588531 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 18, 72 |
| Conread position: | 9-226 |
| Cow position: | chr26:2274398-2274610 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 11, 42 |
| Conread position: | 10-209 |
| Cow position: | chr26:18033875-18033675 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 75, 140 |
| Conread position: | 10-295 |
| Cow position: | chr26:6848321-6848607 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 12-226 |
| Cow position: | chr26:32052047-32051835 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 56, 28 |
| Conread position: | 17-293 |
| Cow position: | chr26:8614112-8614383 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 259, 32 |
| Conread position: | 18-267 |
| Cow position: | chr26:8919944-8919695 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-270 |
| Cow position: | chr26:9561665-9561919 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 24, 117 |
| Conread position: | 18-295 |
| Cow position: | chr26:1087331-1087615 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 92, 177 |
| Conread position: | 18-295 |
| Cow position: | chr26:14895055-14894780 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 58 |
| Conread position: | 18-295 |
| Cow position: | chr26:18853333-18853056 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-299 |
| Cow position: | chr26:2351245-2351531 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 24, 95 |
| Conread position: | 19-291 |
| Cow position: | chr26:19350409-19350676 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 265, 28 |
| Conread position: | 26-304 |
| Cow position: | chr26:21825585-21825863 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 28, 85 |
| Conread position: | 33-195 |
| Cow position: | chr26:11287378-11287217 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 83, 6 |
| Conread position: | 41-267 |
| Cow position: | chr26:2199717-2199490 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 56-225 |
| Cow position: | chr26:20264765-20264599 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 60, 53 |
| Conread position: | 62-250 |
| Cow position: | chr26:19947168-19947354 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 135-295 |
| Cow position: | chr26:5676125-5675965 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 293-730 |
| Cow position: | chr26:12587751-12588229 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 19, 271 |
| Conread position: | 293-741 |
| Cow position: | chr26:18853035-18852544 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 272 |
| Conread position: | 293-855 |
| Cow position: | chr26:8919648-8919065 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 364 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 69, 47 |
| Conread position: | 366-742 |
| Cow position: | chr26:4805835-4806237 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 44, 183 |
| Conread position: | 372-730 |
| Cow position: | chr26:3030108-3030492 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 255 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 38, 177 |
| Conread position: | 372-736 |
| Cow position: | chr26:8870595-8870212 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 38, 182 |
| Conread position: | 372-742 |
| Cow position: | chr26:15144040-15144436 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 43, 183 |
| Conread position: | 372-742 |
| Cow position: | chr26:30783463-30783067 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 261 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 38, 183 |
| Conread position: | 446-855 |
| Cow position: | chr26:2199258-2198841 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 37, 89 |
| Conread position: | 455-672 |
| Cow position: | chr26:21826057-21826286 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 28, 78 |
| Conread position: | 456-881 |
| Cow position: | chr26:20036726-20036292 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 282 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 93, 73 |
| Conread position: | 460-736 |
| Cow position: | chr26:30588748-30589035 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 23, 81 |
| Conread position: | 463-862 |
| Cow position: | chr26:4333688-4334096 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 102, 44 |
| Conread position: | 466-736 |
| Cow position: | chr26:11253450-11253727 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 99, 64 |
Show alignments to all cow chromosomes.