Cow genome map
| Conread name: | Ss1.1-rthg14_d21.5 |
| Conread position: | 2-243 |
| Cow position: | chr27:29854418-29854174 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 16, 58 |
| Conread position: | 5-295 |
| Cow position: | chr27:9992136-9992424 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 202 |
| Conread position: | 7-295 |
| Cow position: | chr27:14459385-14459676 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 30, 205 |
| Conread position: | 7-295 |
| Cow position: | chr27:28079495-28079215 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 12, 33 |
| Conread position: | 10-157 |
| Cow position: | chr27:27664059-27663909 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 10-295 |
| Cow position: | chr27:1210414-1210129 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 193 |
| Conread position: | 10-295 |
| Cow position: | chr27:15636288-15636574 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 17-252 |
| Cow position: | chr27:26035740-26035972 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 17-295 |
| Cow position: | chr27:28892646-28892371 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 99, 34 |
| Conread position: | 18-285 |
| Cow position: | chr27:13898371-13898110 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 18-295 |
| Cow position: | chr27:9330784-9330501 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 18-295 |
| Cow position: | chr27:11095854-11095577 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-295 |
| Cow position: | chr27:30273153-30273431 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 19-295 |
| Cow position: | chr27:26326122-26325846 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-295 |
| Cow position: | chr27:15036547-15036814 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 22-295 |
| Cow position: | chr27:5911914-5911641 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 32, 16 |
| Conread position: | 24-289 |
| Cow position: | chr27:3234496-3234760 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 248 |
| Conread position: | 24-294 |
| Cow position: | chr27:26554629-26554891 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 260, 162 |
| Conread position: | 35-198 |
| Cow position: | chr27:15126605-15126441 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 61, 131 |
| Conread position: | 41-266 |
| Cow position: | chr27:16033366-16033590 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 41-285 |
| Cow position: | chr27:23336186-23335945 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 41-589 |
| Cow position: | chr27:27195607-27196181 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 391 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 135, 73 |
| Conread position: | 51-222 |
| Cow position: | chr27:16551461-16551296 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 56-298 |
| Cow position: | chr27:27507160-27506918 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 69-253 |
| Cow position: | chr27:25803900-25804083 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 79-381 |
| Cow position: | chr27:23725034-23725339 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 168, 155 |
| Conread position: | 92-294 |
| Cow position: | chr27:24215774-24215567 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 61, 149 |
| Conread position: | 93-295 |
| Cow position: | chr27:15542304-15542101 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 293-747 |
| Cow position: | chr27:28079194-28078708 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 328 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 293-818 |
| Cow position: | chr27:6014528-6013985 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 361 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 24, 148 |
| Conread position: | 372-730 |
| Cow position: | chr27:15541986-15541602 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 38, 177 |
| Conread position: | 372-742 |
| Cow position: | chr27:16033737-16034133 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 264 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 38, 183 |
| Conread position: | 442-806 |
| Cow position: | chr27:15123506-15123150 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 41, 25 |
| Conread position: | 446-748 |
| Cow position: | chr27:1209925-1209614 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 37, 95 |
| Conread position: | 449-869 |
| Cow position: | chr27:27499155-27498736 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 452-850 |
| Cow position: | chr27:27752644-27753039 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 109, 31 |
| Conread position: | 455-885 |
| Cow position: | chr27:26555100-26555535 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 301 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 25, 86 |
| Conread position: | 466-743 |
| Cow position: | chr27:25804359-25804638 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 92, 64 |
| Conread position: | 466-754 |
| Cow position: | chr27:15637822-15638113 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 135, 70 |
| Conread position: | 476-879 |
| Cow position: | chr27:1138918-1138506 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 89, 60 |
Show alignments to all cow chromosomes.