Cow genome map

Conread name: Ss1.1-rthg14_d21.5

Conread position: 1-110
Cow position: chr28:11025780-11025890 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 1-154
Cow position: chr28:7028664-7028816 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 19, 61

Conread position: 1-221
Cow position: chr28:2987971-2988191 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 18, 47

Conread position: 1-223
Cow position: chr28:18146621-18146839 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 164
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 17, 46

Conread position: 1-241
Cow position: chr28:5799409-5799169 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 174
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 191, 20

Conread position: 1-249
Cow position: chr28:13603720-13603967 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 180
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 18, 31

Conread position: 1-267
Cow position: chr28:10460493-10460757 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 189
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 39, 18

Conread position: 1-283
Cow position: chr28:29760816-29761098 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 17, 29

Conread position: 1-285
Cow position: chr28:8719832-8720116 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 276

Conread position: 1-294
Cow position: chr28:10072386-10072090 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 33

Conread position: 1-295
Cow position: chr28:24668723-24668438 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 207
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 18, 39

Conread position: 1-298
Cow position: chr28:6231662-6231956 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 9

Conread position: 1-359
Cow position: chr28:5814485-5814120 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 257
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 17, 33

Conread position: 2-283
Cow position: chr28:5803151-5802864 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 2-285
Cow position: chr28:15587204-15586916 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 214
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 17, 117

Conread position: 3-221
Cow position: chr28:24541204-24540985 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 150
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 15, 38

Conread position: 3-262
Cow position: chr28:28439923-28439672 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 173
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 18, 56

Conread position: 3-295
Cow position: chr28:5113186-5113478 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 45

Conread position: 3-295
Cow position: chr28:10580979-10581269 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 184

Conread position: 5-381
Cow position: chr28:29821105-29820715 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 262
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 14, 349

Conread position: 5-754
Cow position: chr28:7741556-7740782 (view UCSC Genome Browser custom track)
Alignm length: 786
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 43

Conread position: 7-285
Cow position: chr28:1386292-1386563 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 201
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 11, 41

Conread position: 7-285
Cow position: chr28:5765858-5765572 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 199
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 14, 7

Conread position: 7-285
Cow position: chr28:7003103-7002824 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 7-296
Cow position: chr28:12151414-12151123 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 145

Conread position: 7-381
Cow position: chr28:15035004-15035387 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 248
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 12, 207

Conread position: 9-285
Cow position: chr28:1813757-1814035 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 10-267
Cow position: chr28:9179729-9179473 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 183
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 9, 38

Conread position: 10-267
Cow position: chr28:24589961-24589698 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 180
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 9, 183

Conread position: 10-267
Cow position: chr28:24883869-24884131 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 183
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 8, 0

Conread position: 10-285
Cow position: chr28:3191151-3191427 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-291
Cow position: chr28:18519344-18519627 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-295
Cow position: chr28:1505971-1505688 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 39

Conread position: 10-295
Cow position: chr28:8380168-8379875 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 226

Conread position: 10-295
Cow position: chr28:17666202-17666484 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 227

Conread position: 10-295
Cow position: chr28:22260047-22260333 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-295
Cow position: chr28:26425151-26425437 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-754
Cow position: chr28:12409130-12409927 (view UCSC Genome Browser custom track)
Alignm length: 802
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 103

Conread position: 11-215
Cow position: chr28:10873312-10873115 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 100

Conread position: 14-225
Cow position: chr28:11490368-11490574 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 172
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 5, 26

Conread position: 14-295
Cow position: chr28:1166778-1167058 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 202
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 5, 130

Conread position: 17-251
Cow position: chr28:22064299-22064528 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 155, 0

Conread position: 17-285
Cow position: chr28:32791281-32791547 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 18-251
Cow position: chr28:32358796-32358569 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 156
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 176, 43

Conread position: 18-260
Cow position: chr28:484501-484740 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 159
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 163, 0

Conread position: 18-267
Cow position: chr28:2723829-2724077 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 168
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 128, 0

Conread position: 18-284
Cow position: chr28:5750612-5750870 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 193
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 188, 0

Conread position: 18-285
Cow position: chr28:1217059-1217325 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 166

Conread position: 18-295
Cow position: chr28:5938580-5938303 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-295
Cow position: chr28:6538169-6538445 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 188
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 146, 0

Conread position: 18-295
Cow position: chr28:14704292-14704569 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 19-575
Cow position: chr28:15684336-15683772 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 355
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 14, 282

Conread position: 22-294
Cow position: chr28:10646325-10646584 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 193
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 262, 38

Conread position: 24-295
Cow position: chr28:5567244-5566973 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 193
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 24-590
Cow position: chr28:7811536-7810969 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 16

Conread position: 26-206
Cow position: chr28:592103-592283 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 122
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 26-294
Cow position: chr28:33246985-33247256 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 185
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 6, 24

Conread position: 28-208
Cow position: chr28:9268938-9268762 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 5, 0

Conread position: 33-216
Cow position: chr28:14194446-14194628 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 128
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 139, 0

Conread position: 33-232
Cow position: chr28:14232852-14233057 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 37, 6

Conread position: 41-268
Cow position: chr28:21360557-21360330 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 160
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 135, 171

Conread position: 41-295
Cow position: chr28:13461046-13460792 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 185
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 41-295
Cow position: chr28:14751615-14751362 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 175
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 8, 0

Conread position: 43-291
Cow position: chr28:783740-783495 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 176
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 39, 0

Conread position: 46-262
Cow position: chr28:6779271-6779487 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 149
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 52-742
Cow position: chr28:22232359-22233094 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 136

Conread position: 65-220
Cow position: chr28:17382084-17382237 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 78-294
Cow position: chr28:3019682-3019902 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 162
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 205, 0

Conread position: 89-296
Cow position: chr28:7823565-7823359 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 143
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 181, 0

Conread position: 95-298
Cow position: chr28:25169064-25169258 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 95, 0

Conread position: 96-285
Cow position: chr28:33253321-33253132 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 96-295
Cow position: chr28:2085517-2085321 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 139
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 92, 0

Conread position: 128-295
Cow position: chr28:17389467-17389300 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 141-295
Cow position: chr28:15574467-15574319 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 293-829
Cow position: chr28:10072072-10071510 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 374
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 65, 25

Conread position: 293-876
Cow position: chr28:2988440-2989061 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 84

Conread position: 372-715
Cow position: chr28:2724221-2724590 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 244
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 38, 177

Conread position: 372-742
Cow position: chr28:1953833-1953435 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 262
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 38, 185

Conread position: 372-742
Cow position: chr28:6779636-6780028 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 261
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 38, 176

Conread position: 375-850
Cow position: chr28:10229525-10230015 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 335
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 40, 164

Conread position: 413-871
Cow position: chr28:14914171-14913692 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 320
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 25, 18

Conread position: 444-730
Cow position: chr28:6538645-6538944 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 199
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 7, 92

Conread position: 444-742
Cow position: chr28:7822874-7822563 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 210
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 7, 90

Conread position: 444-752
Cow position: chr28:2084214-2083897 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 222
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 39, 89

Conread position: 444-754
Cow position: chr28:5113676-5113997 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 225
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 39, 97

Conread position: 444-757
Cow position: chr28:14751162-14750838 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 218
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 7, 92

Conread position: 445-685
Cow position: chr28:8720677-8720930 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 176
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 38, 54

Conread position: 446-754
Cow position: chr28:783011-782696 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 213
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 37, 95

Conread position: 446-754
Cow position: chr28:1814249-1814566 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 219
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 37, 95

Conread position: 446-754
Cow position: chr28:32791760-32792079 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 225
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 31, 18

Conread position: 448-851
Cow position: chr28:5801611-5801190 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 293
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 49, 100

Conread position: 452-818
Cow position: chr28:3020140-3020502 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 252
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 32, 86

Conread position: 461-731
Cow position: chr28:1386809-1387080 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 190
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 105, 18

Conread position: 466-681
Cow position: chr28:14195097-14195321 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 155
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 86, 57

Conread position: 466-870
Cow position: chr28:10646800-10647198 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 271
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 101, 64

Conread position: 606-862
Cow position: chr28:21359788-21359525 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 179
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 11, 88

Conread position: 628-869
Cow position: chr28:29092141-29092387 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 179
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 137, 66

Conread position: 633-851
Cow position: chr28:29436444-29436665 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 131, 61

Conread position: 664-839
Cow position: chr28:17312863-17312685 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 73, 30

Conread position: 666-871
Cow position: chr28:15586502-15586287 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 80, 24

Conread position: 687-828
Cow position: chr28:18101111-18101250 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 9, 0

Show alignments to all cow chromosomes.