Cow genome map

Conread name: Ss1.1-rthg14_d21.5

Conread position: 1-200
Cow position:
Alignm length: 202
Alignm identity: 143
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 18, 38

Conread position: 1-203
Cow position:
Alignm length: 203
Alignm identity: 151
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 145, 0

Conread position: 1-220
Cow position:
Alignm length: 221
Alignm identity: 155
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 18, 46

Conread position: 1-295
Cow position:
Alignm length: 296
Alignm identity: 208
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 18, 47

Conread position: 1-296
Cow position:
Alignm length: 300
Alignm identity: 209
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 19, 142

Conread position: 1-298
Cow position:
Alignm length: 306
Alignm identity: 213
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 18, 236

Conread position: 2-253
Cow position:
Alignm length: 253
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 210

Conread position: 2-293
Cow position:
Alignm length: 296
Alignm identity: 212
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 17, 82

Conread position: 3-173
Cow position:
Alignm length: 173
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 57

Conread position: 3-252
Cow position:
Alignm length: 251
Alignm identity: 177
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 17, 47

Conread position: 3-267
Cow position:
Alignm length: 267
Alignm identity: 184
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 16, 31

Conread position: 3-295
Cow position:
Alignm length: 294
Alignm identity: 195
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 16, 0

Conread position: 3-295
Cow position:
Alignm length: 297
Alignm identity: 192
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 16, 256

Conread position: 3-295
Cow position:
Alignm length: 295
Alignm identity: 194
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 16, 82

Conread position: 3-743
Cow position:
Alignm length: 774
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 45

Conread position: 5-262
Cow position:
Alignm length: 259
Alignm identity: 182
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 14, 43

Conread position: 5-283
Cow position:
Alignm length: 280
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 43

Conread position: 5-285
Cow position:
Alignm length: 284
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 5-285
Cow position:
Alignm length: 284
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 5-285
Cow position:
Alignm length: 284
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 44

Conread position: 5-285
Cow position:
Alignm length: 282
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 183

Conread position: 5-285
Cow position:
Alignm length: 282
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 71

Conread position: 5-295
Cow position:
Alignm length: 299
Alignm identity: 208
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 14, 0

Conread position: 7-206
Cow position:
Alignm length: 201
Alignm identity: 140
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 13, 73

Conread position: 7-295
Cow position:
Alignm length: 290
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 83

Conread position: 7-295
Cow position:
Alignm length: 290
Alignm identity: 208
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 12, 41

Conread position: 9-295
Cow position:
Alignm length: 288
Alignm identity: 203
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 13, 179

Conread position: 9-295
Cow position:
Alignm length: 288
Alignm identity: 200
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 263, 271

Conread position: 10-267
Cow position:
Alignm length: 271
Alignm identity: 180
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 10-270
Cow position:
Alignm length: 262
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 38

Conread position: 10-285
Cow position:
Alignm length: 281
Alignm identity: 196
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 9, 63

Conread position: 10-294
Cow position:
Alignm length: 291
Alignm identity: 211
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 9, 177

Conread position: 10-295
Cow position:
Alignm length: 290
Alignm identity: 207
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 9, 183

Conread position: 10-295
Cow position:
Alignm length: 288
Alignm identity: 209
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 9, 185

Conread position: 10-295
Cow position:
Alignm length: 287
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 17-206
Cow position:
Alignm length: 193
Alignm identity: 137
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 12, 59

Conread position: 17-226
Cow position:
Alignm length: 210
Alignm identity: 147
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 95, 0

Conread position: 17-253
Cow position:
Alignm length: 241
Alignm identity: 170
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 37, 170

Conread position: 17-285
Cow position:
Alignm length: 270
Alignm identity: 174
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 210, 137

Conread position: 17-285
Cow position:
Alignm length: 270
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 17-285
Cow position:
Alignm length: 273
Alignm identity: 182
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 102, 31

Conread position: 18-226
Cow position:
Alignm length: 211
Alignm identity: 151
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 36, 93

Conread position: 18-232
Cow position:
Alignm length: 216
Alignm identity: 145
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 102, 0

Conread position: 18-293
Cow position:
Alignm length: 278
Alignm identity: 200
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 16, 93

Conread position: 18-295
Cow position:
Alignm length: 278
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-295
Cow position:
Alignm length: 283
Alignm identity: 183
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 102, 0

Conread position: 18-295
Cow position:
Alignm length: 279
Alignm identity: 202
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 24, 138

Conread position: 18-295
Cow position:
Alignm length: 287
Alignm identity: 187
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 61, 45

Conread position: 18-295
Cow position:
Alignm length: 278
Alignm identity: 183
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 160, 0

Conread position: 18-295
Cow position:
Alignm length: 278
Alignm identity: 188
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 106, 0

Conread position: 18-295
Cow position:
Alignm length: 285
Alignm identity: 187
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 102, 0

Conread position: 18-295
Cow position:
Alignm length: 278
Alignm identity: 190
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 18-295
Cow position:
Alignm length: 280
Alignm identity: 199
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 18, 172

Conread position: 18-300
Cow position:
Alignm length: 283
Alignm identity: 161
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 20-291
Cow position:
Alignm length: 275
Alignm identity: 192
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 22, 0

Conread position: 20-295
Cow position:
Alignm length: 277
Alignm identity: 190
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 9, 0

Conread position: 22-232
Cow position:
Alignm length: 219
Alignm identity: 162
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 32, 16

Conread position: 22-237
Cow position:
Alignm length: 218
Alignm identity: 152
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 8, 184

Conread position: 22-285
Cow position:
Alignm length: 265
Alignm identity: 188
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 70, 25

Conread position: 26-267
Cow position:
Alignm length: 243
Alignm identity: 169
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 47, 20

Conread position: 27-251
Cow position:
Alignm length: 225
Alignm identity: 150
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 71, 0

Conread position: 27-295
Cow position:
Alignm length: 270
Alignm identity: 179
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 84, 54

Conread position: 41-226
Cow position:
Alignm length: 188
Alignm identity: 132
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 9, 138

Conread position: 41-285
Cow position:
Alignm length: 245
Alignm identity: 173
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 143, 0

Conread position: 41-295
Cow position:
Alignm length: 255
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 41-295
Cow position:
Alignm length: 258
Alignm identity: 188
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 13, 171

Conread position: 41-295
Cow position:
Alignm length: 257
Alignm identity: 183
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 196, 109

Conread position: 41-299
Cow position:
Alignm length: 263
Alignm identity: 190
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 8, 70

Conread position: 41-736
Cow position:
Alignm length: 733
Alignm identity: 447
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 69, 267

Conread position: 43-689
Cow position:
Alignm length: 693
Alignm identity: 439
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 27, 70

Conread position: 44-300
Cow position:
Alignm length: 260
Alignm identity: 178
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 186, 217

Conread position: 69-266
Cow position:
Alignm length: 200
Alignm identity: 141
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 9, 34

Conread position: 69-295
Cow position:
Alignm length: 229
Alignm identity: 158
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 9, 0

Conread position: 77-220
Cow position:
Alignm length: 145
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 42, 33

Conread position: 89-295
Cow position:
Alignm length: 208
Alignm identity: 138
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 109, 0

Conread position: 96-295
Cow position:
Alignm length: 200
Alignm identity: 145
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 90, 0

Conread position: 101-246
Cow position:
Alignm length: 146
Alignm identity: 106
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 139, 0

Conread position: 104-267
Cow position:
Alignm length: 164
Alignm identity: 122
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 293-730
Cow position:
Alignm length: 481
Alignm identity: 309
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 51, 272

Conread position: 293-742
Cow position:
Alignm length: 493
Alignm identity: 319
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 59, 47

Conread position: 293-855
Cow position:
Alignm length: 609
Alignm identity: 385
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 59, 47

Conread position: 295-794
Cow position:
Alignm length: 542
Alignm identity: 354
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 60, 131

Conread position: 371-869
Cow position:
Alignm length: 542
Alignm identity: 359
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 53, 178

Conread position: 372-752
Cow position:
Alignm length: 401
Alignm identity: 265
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 40, 81

Conread position: 372-754
Cow position:
Alignm length: 401
Alignm identity: 264
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 40, 176

Conread position: 438-922
Cow position:
Alignm length: 503
Alignm identity: 325
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 46, 10

Conread position: 442-730
Cow position:
Alignm length: 305
Alignm identity: 205
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 40, 91

Conread position: 442-742
Cow position:
Alignm length: 308
Alignm identity: 210
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 42, 98

Conread position: 442-752
Cow position:
Alignm length: 327
Alignm identity: 223
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 41, 93

Conread position: 442-755
Cow position:
Alignm length: 327
Alignm identity: 221
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 22, 50

Conread position: 444-721
Cow position:
Alignm length: 292
Alignm identity: 196
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 7, 92

Conread position: 444-736
Cow position:
Alignm length: 309
Alignm identity: 209
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 7, 98

Conread position: 444-742
Cow position:
Alignm length: 308
Alignm identity: 201
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 7, 87

Conread position: 444-760
Cow position:
Alignm length: 334
Alignm identity: 234
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 32, 91

Conread position: 446-752
Cow position:
Alignm length: 317
Alignm identity: 214
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 119, 84

Conread position: 446-754
Cow position:
Alignm length: 317
Alignm identity: 215
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 108, 62

Conread position: 446-869
Cow position:
Alignm length: 447
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 82

Conread position: 448-862
Cow position:
Alignm length: 433
Alignm identity: 294
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 35, 85

Conread position: 450-754
Cow position:
Alignm length: 320
Alignm identity: 217
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 33, 91

Conread position: 450-755
Cow position:
Alignm length: 319
Alignm identity: 215
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 34, 89

Conread position: 453-730
Cow position:
Alignm length: 292
Alignm identity: 196
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 30, 82

Conread position: 455-754
Cow position:
Alignm length: 317
Alignm identity: 215
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 22, 86

Conread position: 466-754
Cow position:
Alignm length: 298
Alignm identity: 206
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 82, 63

Conread position: 466-862
Cow position:
Alignm length: 411
Alignm identity: 275
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 100, 69

Conread position: 643-871
Cow position:
Alignm length: 231
Alignm identity: 161
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 92, 53

Conread position: 648-878
Cow position:
Alignm length: 237
Alignm identity: 172
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 87, 21

Show alignments to all cow chromosomes.