Cow genome map

Conread name: Ss1.1-rthg14_d21.5

Conread position: 1-195
Cow position: chr3:4736878-4737070 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 149
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 18, 110

Conread position: 1-203
Cow position: chr3:37625989-37625788 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 152
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 18, 33

Conread position: 1-222
Cow position: chr3:15181355-15181137 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 170
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 17, 51

Conread position: 1-255
Cow position: chr3:13476208-13475958 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 188
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 7, 85

Conread position: 1-268
Cow position: chr3:56339423-56339693 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 1-284
Cow position: chr3:70888134-70887844 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 176

Conread position: 1-285
Cow position: chr3:12678848-12679134 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 33

Conread position: 1-294
Cow position: chr3:31420331-31420037 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 53

Conread position: 1-295
Cow position: chr3:6686801-6686509 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 206
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 18, 94

Conread position: 1-295
Cow position: chr3:49271120-49271409 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 196

Conread position: 1-295
Cow position: chr3:58948619-58948314 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 218
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 18, 0

Conread position: 1-381
Cow position: chr3:64823099-64822696 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 276
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 20, 362

Conread position: 1-589
Cow position: chr3:24353905-24353295 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 91

Conread position: 2-221
Cow position: chr3:4029164-4028945 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 161
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 17, 46

Conread position: 2-225
Cow position: chr3:11198557-11198786 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 166
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 17, 189

Conread position: 2-285
Cow position: chr3:63002550-63002835 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 198
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 16, 0

Conread position: 2-294
Cow position: chr3:19720689-19720973 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 214
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 17, 57

Conread position: 2-294
Cow position: chr3:77424622-77424334 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 206
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 52, 17

Conread position: 2-295
Cow position: chr3:29579619-29579325 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 206
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 16, 28

Conread position: 2-548
Cow position: chr3:38494229-38493645 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 384
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 16, 109

Conread position: 3-197
Cow position: chr3:42052168-42052361 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 17, 38

Conread position: 3-225
Cow position: chr3:40343113-40342888 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 16, 0

Conread position: 3-232
Cow position: chr3:24346954-24346730 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 16, 46

Conread position: 3-267
Cow position: chr3:37970033-37969768 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 182
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 16, 0

Conread position: 3-267
Cow position: chr3:68698979-68699237 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 180
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 16, 48

Conread position: 3-283
Cow position: chr3:50916326-50916048 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 194
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 16, 70

Conread position: 3-291
Cow position: chr3:3840814-3841107 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 205
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 16, 282

Conread position: 3-293
Cow position: chr3:18355280-18355575 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 208
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 17, 34

Conread position: 3-294
Cow position: chr3:19939880-19939588 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 199
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 16, 57

Conread position: 3-295
Cow position: chr3:2918454-2918161 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 193
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 16, 0

Conread position: 3-295
Cow position: chr3:4287076-4286783 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 195
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 16, 0

Conread position: 3-295
Cow position: chr3:19889616-19889902 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 204
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 17, 37

Conread position: 3-295
Cow position: chr3:27919414-27919121 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 196
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 16, 0

Conread position: 3-856
Cow position: chr3:21147741-21148641 (view UCSC Genome Browser custom track)
Alignm length: 914
Alignm identity: 574
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 127

Conread position: 5-285
Cow position: chr3:40824378-40824100 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 201

Conread position: 5-285
Cow position: chr3:48229486-48229762 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 204
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 14, 129

Conread position: 5-295
Cow position: chr3:18812489-18812207 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 206
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 14, 43

Conread position: 5-295
Cow position: chr3:59862366-59862073 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 271

Conread position: 5-754
Cow position: chr3:21181711-21182502 (view UCSC Genome Browser custom track)
Alignm length: 801
Alignm identity: 541
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 567

Conread position: 6-200
Cow position: chr3:36877695-36877891 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 13, 0

Conread position: 6-231
Cow position: chr3:79431720-79431942 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 154
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 9, 0

Conread position: 6-295
Cow position: chr3:56099211-56098915 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 218
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 24, 8

Conread position: 7-285
Cow position: chr3:45975496-45975211 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 201
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 12, 0

Conread position: 7-293
Cow position: chr3:42448094-42447808 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 204
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 12, 105

Conread position: 8-295
Cow position: chr3:5994100-5994390 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 200
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 27, 0

Conread position: 8-295
Cow position: chr3:53516595-53516310 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 204
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 210, 30

Conread position: 10-260
Cow position: chr3:30617940-30618192 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 173
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 9, 0

Conread position: 10-267
Cow position: chr3:19879638-19879381 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 180
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 9, 194

Conread position: 10-267
Cow position: chr3:20381527-20381269 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 183
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 9, 62

Conread position: 10-267
Cow position: chr3:45033735-45033474 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 179
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 9, 0

Conread position: 10-267
Cow position: chr3:47080430-47080686 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 176
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 8, 38

Conread position: 10-269
Cow position: chr3:30315541-30315288 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 177
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 9, 58

Conread position: 10-270
Cow position: chr3:63200592-63200337 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 80

Conread position: 10-286
Cow position: chr3:64356813-64357083 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 199
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 8, 40

Conread position: 10-294
Cow position: chr3:62788408-62788694 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 198
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 32, 104

Conread position: 10-295
Cow position: chr3:5884527-5884242 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-295
Cow position: chr3:18541157-18541442 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 202

Conread position: 10-295
Cow position: chr3:18860397-18860111 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 198
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 9, 0

Conread position: 10-295
Cow position: chr3:49544225-49544512 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 97

Conread position: 10-295
Cow position: chr3:75040177-75040462 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 38

Conread position: 10-295
Cow position: chr3:78026436-78026719 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 70

Conread position: 10-300
Cow position: chr3:56398170-56397879 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 206
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 9, 41

Conread position: 10-381
Cow position: chr3:49136577-49136949 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 240
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 9, 42

Conread position: 17-200
Cow position: chr3:79314903-79314721 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 17, 37

Conread position: 17-219
Cow position: chr3:10095404-10095204 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 146
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 13, 23

Conread position: 17-246
Cow position: chr3:58166061-58165833 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 153
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 138, 0

Conread position: 17-251
Cow position: chr3:62733244-62733010 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 156
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 106, 47

Conread position: 17-291
Cow position: chr3:10240635-10240361 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 261

Conread position: 17-295
Cow position: chr3:24445101-24445380 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 203
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 173

Conread position: 18-225
Cow position: chr3:8239055-8238851 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 101, 30

Conread position: 18-265
Cow position: chr3:19800201-19800448 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 165
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 100, 92

Conread position: 18-267
Cow position: chr3:46680404-46680156 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 167
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 24, 129

Conread position: 18-267
Cow position: chr3:64651608-64651355 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 173
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 24, 34

Conread position: 18-268
Cow position: chr3:47177297-47177547 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 172
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 24, 34

Conread position: 18-282
Cow position: chr3:42994693-42994961 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 181
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 92, 0

Conread position: 18-285
Cow position: chr3:72631049-72630784 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 0

Conread position: 18-291
Cow position: chr3:36863487-36863760 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 186
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 18-295
Cow position: chr3:5953208-5953480 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 198
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 36, 44

Conread position: 18-295
Cow position: chr3:7157749-7158026 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 185
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 18-295
Cow position: chr3:23289359-23289636 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-295
Cow position: chr3:29330306-29330583 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 184
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 18-295
Cow position: chr3:48058382-48058656 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 196
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 29, 0

Conread position: 18-295
Cow position: chr3:48843226-48842948 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 183
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 214, 0

Conread position: 18-295
Cow position: chr3:57483756-57484027 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 198
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 29, 0

Conread position: 18-295
Cow position: chr3:57753771-57753494 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 192
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 24, 34

Conread position: 18-295
Cow position: chr3:63915140-63915417 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 189
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 18-295
Cow position: chr3:68872775-68873055 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 182
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 49, 191

Conread position: 18-481
Cow position: chr3:7170175-7169674 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 326
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 215, 251

Conread position: 21-241
Cow position: chr3:42143890-42144110 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 149
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 22-294
Cow position: chr3:49678770-49678498 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 198
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 95, 52

Conread position: 23-293
Cow position: chr3:19945202-19944931 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 196
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 35, 89

Conread position: 24-277
Cow position: chr3:3057789-3057553 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 174
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 24-287
Cow position: chr3:69100510-69100767 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 171
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 24-295
Cow position: chr3:2709900-2710170 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 195
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 23, 0

Conread position: 26-208
Cow position: chr3:53412135-53411953 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 112, 125

Conread position: 26-213
Cow position: chr3:48560999-48561186 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 158, 46

Conread position: 26-215
Cow position: chr3:67779073-67778886 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 116, 72

Conread position: 26-232
Cow position: chr3:24644199-24643996 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 170, 25

Conread position: 26-295
Cow position: chr3:46503514-46503245 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 194
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 26, 107

Conread position: 26-295
Cow position: chr3:66621151-66620882 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 125

Conread position: 30-220
Cow position: chr3:16075455-16075269 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 151
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 86, 9

Conread position: 33-295
Cow position: chr3:45773447-45773703 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 190
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 6, 0

Conread position: 33-861
Cow position: chr3:83293952-83294799 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 561
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 13

Conread position: 35-267
Cow position: chr3:66890004-66890237 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 87, 171

Conread position: 41-249
Cow position: chr3:24588813-24589022 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 11, 0

Conread position: 41-267
Cow position: chr3:2869732-2869506 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 163
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 41-267
Cow position: chr3:3523974-3523748 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 153
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 41-267
Cow position: chr3:24315421-24315195 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 153
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 147, 8

Conread position: 41-267
Cow position: chr3:32622088-32622316 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 156
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 28, 69

Conread position: 41-294
Cow position: chr3:2906819-2907074 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 187
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 243, 30

Conread position: 41-295
Cow position: chr3:6877223-6877472 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 189
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 81, 60

Conread position: 41-295
Cow position: chr3:50126673-50126934 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 181
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 81, 203

Conread position: 41-298
Cow position: chr3:46860349-46860606 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 176
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 52, 42

Conread position: 43-285
Cow position: chr3:45894603-45894842 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 174
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 65, 0

Conread position: 46-218
Cow position: chr3:22853540-22853713 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 36, 50

Conread position: 53-295
Cow position: chr3:19756008-19756250 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 179
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 53-295
Cow position: chr3:34029964-34030206 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 169
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 56-258
Cow position: chr3:58854724-58854519 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 140
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 71, 53

Conread position: 58-249
Cow position: chr3:60081981-60082170 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 26, 19

Conread position: 58-295
Cow position: chr3:30331547-30331787 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 164
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 20, 0

Conread position: 61-293
Cow position: chr3:42433148-42432920 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 226, 74

Conread position: 61-295
Cow position: chr3:83232315-83232544 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 159
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 28, 0

Conread position: 62-268
Cow position: chr3:18462638-18462844 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 62-295
Cow position: chr3:7480299-7480530 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 175
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 12, 0

Conread position: 69-295
Cow position: chr3:23213152-23213378 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 167
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 79-295
Cow position: chr3:34846061-34845837 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 158
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 14, 72

Conread position: 89-267
Cow position: chr3:36118567-36118389 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 89-267
Cow position: chr3:40339208-40339386 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 125
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 92-251
Cow position: chr3:16899463-16899623 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 141, 0

Conread position: 95-217
Cow position: chr3:61492289-61492169 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 293-684
Cow position: chr3:47080735-47081165 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 280
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 47, 12

Conread position: 293-730
Cow position: chr3:29330604-29331070 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 303
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 69, 47

Conread position: 293-730
Cow position: chr3:68699286-68699772 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 321
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 59, 47

Conread position: 293-736
Cow position: chr3:36118341-36117857 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 319
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 59, 47

Conread position: 293-736
Cow position: chr3:64027406-64027891 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 320
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 59, 47

Conread position: 293-742
Cow position: chr3:19879332-19878847 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 317
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 69, 47

Conread position: 293-742
Cow position: chr3:20381220-20380731 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 319
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 51, 267

Conread position: 293-742
Cow position: chr3:32622365-32622848 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 320
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 59, 47

Conread position: 293-742
Cow position: chr3:40339435-40339923 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 327
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 59, 46

Conread position: 293-755
Cow position: chr3:3523699-3523198 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 335
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 51, 267

Conread position: 293-755
Cow position: chr3:64651306-64650803 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 337
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 47, 279

Conread position: 293-842
Cow position: chr3:2918140-2917554 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 377
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 59, 47

Conread position: 293-857
Cow position: chr3:37625648-37625049 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 125

Conread position: 293-860
Cow position: chr3:48229793-48230375 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 398
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 35, 262

Conread position: 298-742
Cow position: chr3:6783045-6782573 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 303
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 54, 42

Conread position: 350-743
Cow position: chr3:14439156-14439573 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 275
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 60, 203

Conread position: 360-760
Cow position: chr3:6878473-6878880 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 280
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 16, 10

Conread position: 371-869
Cow position: chr3:52863546-52864069 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 350
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 32, 26

Conread position: 372-692
Cow position: chr3:4737391-4737735 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 234
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 40, 184

Conread position: 372-730
Cow position: chr3:24315051-24314668 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 252
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 38, 159

Conread position: 372-730
Cow position: chr3:68873170-68873554 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 250
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 38, 182

Conread position: 372-742
Cow position: chr3:18859995-18859603 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 261
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 38, 174

Conread position: 372-742
Cow position: chr3:22336473-22336077 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 264
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 38, 177

Conread position: 372-742
Cow position: chr3:46860719-46861114 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 261
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 43, 176

Conread position: 372-742
Cow position: chr3:49613396-49613788 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 261
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 50, 38

Conread position: 372-747
Cow position: chr3:50915916-50915517 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 272
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 43, 177

Conread position: 372-755
Cow position: chr3:66890381-66890786 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 261
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 50, 38

Conread position: 372-886
Cow position: chr3:37969627-37969097 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 345
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 50, 38

Conread position: 376-871
Cow position: chr3:32616413-32616942 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 362
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 39, 149

Conread position: 377-730
Cow position: chr3:19737160-19736781 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 250
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 33, 172

Conread position: 385-852
Cow position: chr3:31416103-31415619 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 95

Conread position: 430-857
Cow position: chr3:70887656-70887211 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 10

Conread position: 443-836
Cow position: chr3:21304293-21304694 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 290
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 40, 5

Conread position: 444-685
Cow position: chr3:48842670-48842416 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 173
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 39, 91

Conread position: 444-726
Cow position: chr3:50012171-50011882 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 204
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 52, 15

Conread position: 444-730
Cow position: chr3:1516655-1516356 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 200
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 7, 92

Conread position: 444-742
Cow position: chr3:41211235-41211548 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 204
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 7, 99

Conread position: 444-742
Cow position: chr3:45033241-45032930 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 207
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 7, 264

Conread position: 444-742
Cow position: chr3:46679930-46679620 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 203
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 7, 98

Conread position: 444-754
Cow position: chr3:49544706-49545022 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 220
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 33, 90

Conread position: 446-866
Cow position: chr3:12679520-12679961 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 86

Conread position: 446-866
Cow position: chr3:18356004-18356417 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 286
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 108, 90

Conread position: 447-840
Cow position: chr3:49334283-49333881 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 13

Conread position: 448-754
Cow position: chr3:5884039-5883723 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 215
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 35, 86

Conread position: 448-869
Cow position: chr3:15179197-15178776 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 299
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 28, 71

Conread position: 450-748
Cow position: chr3:56339929-56340236 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 209
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 34, 17

Conread position: 450-754
Cow position: chr3:23289843-23290157 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 216
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 34, 91

Conread position: 450-755
Cow position: chr3:46503033-46502717 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 220
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 34, 91

Conread position: 450-874
Cow position: chr3:49271993-49272435 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 254

Conread position: 452-861
Cow position: chr3:19721668-19722105 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 89

Conread position: 455-754
Cow position: chr3:10240149-10239838 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 217
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 28, 252

Conread position: 455-754
Cow position: chr3:78026932-78027225 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 213
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 21, 67

Conread position: 455-856
Cow position: chr3:83232751-83233162 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 289
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 21, 49

Conread position: 456-867
Cow position: chr3:42995189-42995614 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 280
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 46, 22

Conread position: 460-753
Cow position: chr3:77424292-77423987 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 209
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 8, 80

Conread position: 460-855
Cow position: chr3:66991571-66991172 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 258
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 160, 23

Conread position: 466-754
Cow position: chr3:19756479-19756774 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 207
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 88, 71

Conread position: 497-706
Cow position: chr3:74439744-74439528 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 154
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 57, 31

Conread position: 514-886
Cow position: chr3:64357420-64357787 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 253
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 88, 38

Conread position: 570-861
Cow position: chr3:18728408-18728688 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 204
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 27, 93

Conread position: 629-846
Cow position: chr3:50127402-50127629 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 154
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 58, 0

Show alignments to all cow chromosomes.