Cow genome map

Conread name: Ss1.1-rthg14_d21.5

Conread position: 1-189
Cow position:
Alignm length: 190
Alignm identity: 110
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 18, 29

Conread position: 1-205
Cow position:
Alignm length: 205
Alignm identity: 142
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 21, 0

Conread position: 1-222
Cow position:
Alignm length: 224
Alignm identity: 164
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 18, 111

Conread position: 1-256
Cow position:
Alignm length: 257
Alignm identity: 181
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 18, 33

Conread position: 1-294
Cow position:
Alignm length: 300
Alignm identity: 201
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 19, 84

Conread position: 1-294
Cow position:
Alignm length: 298
Alignm identity: 210
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 18, 112

Conread position: 1-295
Cow position:
Alignm length: 308
Alignm identity: 225
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 18, 32

Conread position: 1-295
Cow position:
Alignm length: 296
Alignm identity: 205
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 18, 51

Conread position: 1-295
Cow position:
Alignm length: 297
Alignm identity: 214
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 18, 39

Conread position: 1-295
Cow position:
Alignm length: 313
Alignm identity: 226
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 18, 0

Conread position: 1-298
Cow position:
Alignm length: 310
Alignm identity: 214
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 18, 33

Conread position: 1-311
Cow position:
Alignm length: 313
Alignm identity: 209
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 18, 128

Conread position: 1-393
Cow position:
Alignm length: 413
Alignm identity: 280
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 18, 39

Conread position: 1-715
Cow position:
Alignm length: 716
Alignm identity: 128
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 20, 0

Conread position: 1-862
Cow position:
Alignm length: 926
Alignm identity: 603
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 253

Conread position: 2-284
Cow position:
Alignm length: 287
Alignm identity: 199
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 17, 82

Conread position: 2-294
Cow position:
Alignm length: 308
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 184

Conread position: 2-296
Cow position:
Alignm length: 299
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 38

Conread position: 2-382
Cow position:
Alignm length: 389
Alignm identity: 247
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 17, 139

Conread position: 2-856
Cow position:
Alignm length: 896
Alignm identity: 581
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 238

Conread position: 3-225
Cow position:
Alignm length: 224
Alignm identity: 148
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 3-253
Cow position:
Alignm length: 255
Alignm identity: 179
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 16, 79

Conread position: 3-266
Cow position:
Alignm length: 265
Alignm identity: 181
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 16, 38

Conread position: 3-267
Cow position:
Alignm length: 270
Alignm identity: 185
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 16, 113

Conread position: 3-267
Cow position:
Alignm length: 268
Alignm identity: 184
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 16, 0

Conread position: 3-267
Cow position:
Alignm length: 267
Alignm identity: 189
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 16, 115

Conread position: 3-291
Cow position:
Alignm length: 291
Alignm identity: 195
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 16, 186

Conread position: 5-285
Cow position:
Alignm length: 282
Alignm identity: 199
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 14, 0

Conread position: 5-295
Cow position:
Alignm length: 292
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 130

Conread position: 6-681
Cow position:
Alignm length: 723
Alignm identity: 453
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 16, 71

Conread position: 10-231
Cow position:
Alignm length: 228
Alignm identity: 155
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 10-231
Cow position:
Alignm length: 227
Alignm identity: 155
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 9, 0

Conread position: 10-266
Cow position:
Alignm length: 260
Alignm identity: 190
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 9, 187

Conread position: 10-283
Cow position:
Alignm length: 276
Alignm identity: 194
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 9, 38

Conread position: 10-285
Cow position:
Alignm length: 277
Alignm identity: 199
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 9, 38

Conread position: 10-285
Cow position:
Alignm length: 277
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-294
Cow position:
Alignm length: 290
Alignm identity: 198
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 9, 0

Conread position: 10-295
Cow position:
Alignm length: 287
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 197

Conread position: 10-295
Cow position:
Alignm length: 288
Alignm identity: 198
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 9, 112

Conread position: 10-295
Cow position:
Alignm length: 287
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-295
Cow position:
Alignm length: 287
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 82

Conread position: 10-295
Cow position:
Alignm length: 287
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 10-295
Cow position:
Alignm length: 288
Alignm identity: 202
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 9, 178

Conread position: 14-294
Cow position:
Alignm length: 286
Alignm identity: 207
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 5, 98

Conread position: 14-520
Cow position:
Alignm length: 531
Alignm identity: 339
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 5, 251

Conread position: 17-239
Cow position:
Alignm length: 224
Alignm identity: 160
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 101, 38

Conread position: 17-295
Cow position:
Alignm length: 280
Alignm identity: 188
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 99, 31

Conread position: 18-175
Cow position:
Alignm length: 158
Alignm identity: 118
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 83, 0

Conread position: 18-267
Cow position:
Alignm length: 252
Alignm identity: 172
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 24, 0

Conread position: 18-267
Cow position:
Alignm length: 250
Alignm identity: 175
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 29, 0

Conread position: 18-295
Cow position:
Alignm length: 278
Alignm identity: 182
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 18-295
Cow position:
Alignm length: 282
Alignm identity: 207
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 22, 107

Conread position: 18-295
Cow position:
Alignm length: 278
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-295
Cow position:
Alignm length: 279
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 18-295
Cow position:
Alignm length: 278
Alignm identity: 198
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 29, 0

Conread position: 18-295
Cow position:
Alignm length: 284
Alignm identity: 204
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 20, 198

Conread position: 20-267
Cow position:
Alignm length: 252
Alignm identity: 169
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 6, 48

Conread position: 20-295
Cow position:
Alignm length: 278
Alignm identity: 190
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 32, 0

Conread position: 21-268
Cow position:
Alignm length: 248
Alignm identity: 168
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 103, 0

Conread position: 22-237
Cow position:
Alignm length: 216
Alignm identity: 144
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 77, 0

Conread position: 23-285
Cow position:
Alignm length: 266
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 24-285
Cow position:
Alignm length: 262
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 24-295
Cow position:
Alignm length: 273
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 17

Conread position: 24-295
Cow position:
Alignm length: 272
Alignm identity: 189
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 120, 0

Conread position: 26-198
Cow position:
Alignm length: 173
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 26-285
Cow position:
Alignm length: 262
Alignm identity: 187
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 31, 125

Conread position: 26-331
Cow position:
Alignm length: 314
Alignm identity: 215
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 8, 24

Conread position: 33-295
Cow position:
Alignm length: 264
Alignm identity: 189
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 172, 49

Conread position: 34-249
Cow position:
Alignm length: 216
Alignm identity: 144
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 176, 0

Conread position: 34-853
Cow position:
Alignm length: 882
Alignm identity: 556
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 13, 77

Conread position: 35-222
Cow position:
Alignm length: 188
Alignm identity: 133
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 88, 0

Conread position: 41-267
Cow position:
Alignm length: 228
Alignm identity: 161
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 157, 0

Conread position: 41-285
Cow position:
Alignm length: 245
Alignm identity: 182
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 145, 0

Conread position: 41-295
Cow position:
Alignm length: 257
Alignm identity: 165
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 69, 8

Conread position: 41-295
Cow position:
Alignm length: 255
Alignm identity: 183
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 41-295
Cow position:
Alignm length: 258
Alignm identity: 184
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 28, 115

Conread position: 41-295
Cow position:
Alignm length: 256
Alignm identity: 183
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 22, 166

Conread position: 41-295
Cow position:
Alignm length: 258
Alignm identity: 185
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 75, 14

Conread position: 41-298
Cow position:
Alignm length: 258
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 43-261
Cow position:
Alignm length: 219
Alignm identity: 153
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 47-252
Cow position:
Alignm length: 206
Alignm identity: 140
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 89-294
Cow position:
Alignm length: 206
Alignm identity: 154
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 98, 0

Conread position: 99-295
Cow position:
Alignm length: 199
Alignm identity: 137
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 6, 20

Conread position: 102-294
Cow position:
Alignm length: 198
Alignm identity: 152
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 69, 0

Conread position: 110-689
Cow position:
Alignm length: 625
Alignm identity: 414
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 174, 422

Conread position: 228-851
Cow position:
Alignm length: 675
Alignm identity: 442
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 48, 339

Conread position: 293-742
Cow position:
Alignm length: 494
Alignm identity: 324
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 58, 272

Conread position: 293-742
Cow position:
Alignm length: 484
Alignm identity: 308
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 69, 47

Conread position: 293-772
Cow position:
Alignm length: 501
Alignm identity: 311
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 69, 47

Conread position: 293-820
Cow position:
Alignm length: 567
Alignm identity: 366
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 40, 258

Conread position: 293-862
Cow position:
Alignm length: 619
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 271

Conread position: 293-862
Cow position:
Alignm length: 615
Alignm identity: 397
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 60, 48

Conread position: 363-857
Cow position:
Alignm length: 519
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 182

Conread position: 363-904
Cow position:
Alignm length: 578
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 36

Conread position: 372-685
Cow position:
Alignm length: 348
Alignm identity: 243
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 42, 8

Conread position: 372-730
Cow position:
Alignm length: 388
Alignm identity: 260
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 38, 176

Conread position: 372-742
Cow position:
Alignm length: 396
Alignm identity: 253
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 50, 38

Conread position: 372-742
Cow position:
Alignm length: 394
Alignm identity: 253
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 38, 183

Conread position: 372-855
Cow position:
Alignm length: 510
Alignm identity: 321
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 38, 174

Conread position: 372-855
Cow position:
Alignm length: 510
Alignm identity: 322
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 38, 174

Conread position: 372-862
Cow position:
Alignm length: 506
Alignm identity: 323
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 42, 61

Conread position: 372-899
Cow position:
Alignm length: 568
Alignm identity: 368
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 50, 38

Conread position: 374-729
Cow position:
Alignm length: 384
Alignm identity: 251
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 36, 175

Conread position: 400-806
Cow position:
Alignm length: 416
Alignm identity: 278
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 7, 35

Conread position: 438-809
Cow position:
Alignm length: 385
Alignm identity: 257
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 26, 10

Conread position: 438-856
Cow position:
Alignm length: 429
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 12

Conread position: 442-594
Cow position:
Alignm length: 155
Alignm identity: 118
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 106, 0

Conread position: 443-880
Cow position:
Alignm length: 457
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 284

Conread position: 444-742
Cow position:
Alignm length: 315
Alignm identity: 212
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 7, 92

Conread position: 444-742
Cow position:
Alignm length: 314
Alignm identity: 211
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 7, 92

Conread position: 444-742
Cow position:
Alignm length: 314
Alignm identity: 204
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 7, 99

Conread position: 446-754
Cow position:
Alignm length: 324
Alignm identity: 210
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 31, 258

Conread position: 453-730
Cow position:
Alignm length: 292
Alignm identity: 193
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 30, 88

Conread position: 454-742
Cow position:
Alignm length: 302
Alignm identity: 199
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 29, 80

Conread position: 456-754
Cow position:
Alignm length: 307
Alignm identity: 215
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 21, 142

Conread position: 496-754
Cow position:
Alignm length: 268
Alignm identity: 187
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 58, 40

Conread position: 518-866
Cow position:
Alignm length: 359
Alignm identity: 243
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 73, 20

Conread position: 613-861
Cow position:
Alignm length: 262
Alignm identity: 195
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 24, 135

Conread position: 633-874
Cow position:
Alignm length: 245
Alignm identity: 175
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 172, 63

Conread position: 694-879
Cow position:
Alignm length: 193
Alignm identity: 138
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 68, 29

Show alignments to all cow chromosomes.