Cow genome map
| Conread name: | Ss1.1-rthg14_d21.5 |
| Conread position: | 1-195 |
| Cow position: | chr5:18885634-18885825 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 113, 9 |
| Conread position: | 1-209 |
| Cow position: | chr5:31100527-31100737 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 77 |
| Conread position: | 1-209 |
| Cow position: | chr5:34297836-34297628 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 1-209 |
| Cow position: | chr5:47077561-47077362 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 1-222 |
| Cow position: | chr5:9419165-9419397 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 18, 120 |
| Conread position: | 1-261 |
| Cow position: | chr5:18400795-18401055 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 1-262 |
| Cow position: | chr5:40788961-40788694 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-266 |
| Cow position: | chr5:48532918-48532659 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 39 |
| Conread position: | 1-271 |
| Cow position: | chr5:46629284-46629562 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 1-285 |
| Cow position: | chr5:41554440-41554720 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 19, 74 |
| Conread position: | 1-286 |
| Cow position: | chr5:46668842-46668568 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 18, 67 |
| Conread position: | 1-292 |
| Cow position: | chr5:49757775-49758060 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 18, 39 |
| Conread position: | 1-294 |
| Cow position: | chr5:1227569-1227280 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 66, 16 |
| Conread position: | 1-294 |
| Cow position: | chr5:28949976-28950267 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 61 |
| Conread position: | 1-294 |
| Cow position: | chr5:45701211-45700912 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 176 |
| Conread position: | 1-294 |
| Cow position: | chr5:51770053-51770345 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 18, 86 |
| Conread position: | 1-295 |
| Cow position: | chr5:27002898-27002610 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 13, 41 |
| Conread position: | 1-295 |
| Cow position: | chr5:34903087-34902791 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 84 |
| Conread position: | 1-686 |
| Cow position: | chr5:53625027-53625745 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 111 |
| Conread position: | 2-222 |
| Cow position: | chr5:41465967-41465747 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 17, 45 |
| Conread position: | 2-260 |
| Cow position: | chr5:13046345-13046087 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 17, 192 |
| Conread position: | 2-294 |
| Cow position: | chr5:28241945-28241651 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 2-375 |
| Cow position: | chr5:28012550-28012170 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 259 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 17, 62 |
| Conread position: | 3-267 |
| Cow position: | chr5:4018301-4018572 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 3-267 |
| Cow position: | chr5:6588116-6588394 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 3-267 |
| Cow position: | chr5:47830181-47830443 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 16, 46 |
| Conread position: | 3-270 |
| Cow position: | chr5:52434439-52434180 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 201 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 16, 83 |
| Conread position: | 3-285 |
| Cow position: | chr5:32947953-32947667 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 3-285 |
| Cow position: | chr5:39245919-39246200 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 27 |
| Conread position: | 3-285 |
| Cow position: | chr5:41960840-41961113 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 16, 48 |
| Conread position: | 3-285 |
| Cow position: | chr5:46004962-46005242 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 16, 163 |
| Conread position: | 3-295 |
| Cow position: | chr5:4757271-4757563 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 16, 77 |
| Conread position: | 3-295 |
| Cow position: | chr5:18664689-18664392 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 45 |
| Conread position: | 3-295 |
| Cow position: | chr5:32308500-32308791 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 108 |
| Conread position: | 3-593 |
| Cow position: | chr5:58196909-58196274 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 412 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 16, 353 |
| Conread position: | 4-295 |
| Cow position: | chr5:27055783-27056081 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 210 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 5-267 |
| Cow position: | chr5:46664909-46664646 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 14, 236 |
| Conread position: | 5-284 |
| Cow position: | chr5:49519452-49519173 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 14, 106 |
| Conread position: | 5-285 |
| Cow position: | chr5:4386135-4385853 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 14, 105 |
| Conread position: | 5-295 |
| Cow position: | chr5:1341141-1341431 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 110 |
| Conread position: | 5-295 |
| Cow position: | chr5:4070100-4069821 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 14, 74 |
| Conread position: | 5-295 |
| Cow position: | chr5:48807847-48808138 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 6-295 |
| Cow position: | chr5:64781125-64781414 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 231 |
| Conread position: | 7-295 |
| Cow position: | chr5:2915339-2915050 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 15, 183 |
| Conread position: | 7-295 |
| Cow position: | chr5:57481649-57481938 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 7-295 |
| Cow position: | chr5:73488669-73488957 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 71 |
| Conread position: | 9-295 |
| Cow position: | chr5:55628879-55628592 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 10-285 |
| Cow position: | chr5:34697491-34697214 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 10-285 |
| Cow position: | chr5:54791746-54792026 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 9, 88 |
| Conread position: | 10-291 |
| Cow position: | chr5:37733234-37732952 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 204 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 9, 107 |
| Conread position: | 10-295 |
| Cow position: | chr5:26078307-26078597 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 9, 105 |
| Conread position: | 10-295 |
| Cow position: | chr5:46737689-46737973 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 111 |
| Conread position: | 10-295 |
| Cow position: | chr5:53703276-53703558 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 23, 50 |
| Conread position: | 13-294 |
| Cow position: | chr5:14784489-14784764 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 103, 71 |
| Conread position: | 17-253 |
| Cow position: | chr5:49072761-49072999 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 99, 29 |
| Conread position: | 17-283 |
| Cow position: | chr5:58151902-58152154 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 29, 61 |
| Conread position: | 17-294 |
| Cow position: | chr5:33187635-33187367 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 264, 54 |
| Conread position: | 18-267 |
| Cow position: | chr5:35300975-35300727 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 18-267 |
| Cow position: | chr5:46808189-46807940 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-285 |
| Cow position: | chr5:6154024-6154289 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 18-285 |
| Cow position: | chr5:59283194-59282930 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 18-295 |
| Cow position: | chr5:10919702-10919426 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 43 |
| Conread position: | 18-295 |
| Cow position: | chr5:23959439-23959715 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 18-295 |
| Cow position: | chr5:38073909-38073632 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-295 |
| Cow position: | chr5:42505882-42505604 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 18-295 |
| Cow position: | chr5:44460360-44460083 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-295 |
| Cow position: | chr5:45181267-45181544 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-772 |
| Cow position: | chr5:307449-308207 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 19-200 |
| Cow position: | chr5:10855939-10856120 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-300 |
| Cow position: | chr5:32363846-32363572 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 15, 29 |
| Conread position: | 20-267 |
| Cow position: | chr5:3965326-3965079 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 100, 198 |
| Conread position: | 25-295 |
| Cow position: | chr5:3503251-3503515 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 25-295 |
| Cow position: | chr5:24099537-24099271 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 26-229 |
| Cow position: | chr5:51313327-51313528 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 42, 21 |
| Conread position: | 26-267 |
| Cow position: | chr5:10842509-10842750 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 94, 26 |
| Conread position: | 31-220 |
| Cow position: | chr5:57577168-57576977 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 63 |
| Conread position: | 38-203 |
| Cow position: | chr5:26346480-26346315 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 11, 144 |
| Conread position: | 39-206 |
| Cow position: | chr5:47822157-47822322 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 41-248 |
| Cow position: | chr5:18273593-18273391 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 52, 40 |
| Conread position: | 41-251 |
| Cow position: | chr5:75624543-75624333 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 41-267 |
| Cow position: | chr5:31707405-31707179 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 159, 175 |
| Conread position: | 41-285 |
| Cow position: | chr5:3786774-3786532 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 231, 0 |
| Conread position: | 41-285 |
| Cow position: | chr5:49130408-49130166 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 75, 68 |
| Conread position: | 41-295 |
| Cow position: | chr5:30580186-30579930 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 41-295 |
| Cow position: | chr5:54861209-54861454 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 42-200 |
| Cow position: | chr5:61277725-61277882 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 42-241 |
| Cow position: | chr5:54823941-54824140 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 42-260 |
| Cow position: | chr5:43003934-43003721 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 42-381 |
| Cow position: | chr5:53006482-53006132 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 47-184 |
| Cow position: | chr5:14344571-14344706 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 47-283 |
| Cow position: | chr5:49591251-49591486 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 49-295 |
| Cow position: | chr5:46645805-46645565 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 53-267 |
| Cow position: | chr5:46776912-46776698 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 16, 25 |
| Conread position: | 55-245 |
| Cow position: | chr5:43193563-43193752 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 64, 54 |
| Conread position: | 67-232 |
| Cow position: | chr5:57670862-57671027 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 69-295 |
| Cow position: | chr5:242023-241799 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 9, 91 |
| Conread position: | 70-866 |
| Cow position: | chr5:35526622-35525779 (view UCSC Genome Browser custom track) |
| Alignm length: | 860 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 78 |
| Conread position: | 72-285 |
| Cow position: | chr5:26067073-26067291 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 163, 60 |
| Conread position: | 77-294 |
| Cow position: | chr5:29766702-29766486 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 77-295 |
| Cow position: | chr5:36443860-36444077 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 77-295 |
| Cow position: | chr5:59061432-59061214 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 89-294 |
| Cow position: | chr5:47893732-47893938 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 138, 145 |
| Conread position: | 89-295 |
| Cow position: | chr5:41527967-41528173 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 101-295 |
| Cow position: | chr5:48467486-48467680 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 102-295 |
| Cow position: | chr5:44784121-44784313 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 103-285 |
| Cow position: | chr5:12642933-12643116 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 121, 172 |
| Conread position: | 104-295 |
| Cow position: | chr5:7274620-7274432 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 117-294 |
| Cow position: | chr5:28024289-28024110 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 93, 138 |
| Conread position: | 130-268 |
| Cow position: | chr5:35280054-35279916 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 64, 111 |
| Conread position: | 293-685 |
| Cow position: | chr5:12643147-12643575 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 41, 265 |
| Conread position: | 293-685 |
| Cow position: | chr5:35300678-35300243 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 286 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 59, 47 |
| Conread position: | 293-730 |
| Cow position: | chr5:18666573-18666094 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 59, 47 |
| Conread position: | 293-730 |
| Cow position: | chr5:44460062-44459583 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 311 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 58, 272 |
| Conread position: | 293-730 |
| Cow position: | chr5:48467701-48468179 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 309 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 206 |
| Conread position: | 293-736 |
| Cow position: | chr5:59061193-59060711 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 318 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 59, 47 |
| Conread position: | 293-741 |
| Cow position: | chr5:4018621-4019109 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 322 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 59, 47 |
| Conread position: | 293-742 |
| Cow position: | chr5:10775689-10776176 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 50, 139 |
| Conread position: | 293-742 |
| Cow position: | chr5:23959736-23960227 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 47 |
| Conread position: | 293-742 |
| Cow position: | chr5:46664570-46664091 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 322 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 66, 25 |
| Conread position: | 293-768 |
| Cow position: | chr5:48808159-48808665 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 328 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 63, 48 |
| Conread position: | 293-860 |
| Cow position: | chr5:14784782-14785398 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 408 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 59, 278 |
| Conread position: | 296-672 |
| Cow position: | chr5:41555041-41555450 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 84 |
| Conread position: | 297-638 |
| Cow position: | chr5:2531830-2531458 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 43 |
| Conread position: | 297-691 |
| Cow position: | chr5:18401125-18401560 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 55, 172 |
| Conread position: | 297-742 |
| Cow position: | chr5:31707126-31706662 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 300 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 65, 42 |
| Conread position: | 372-736 |
| Cow position: | chr5:46776563-46776173 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 341 |
| Conread position: | 372-855 |
| Cow position: | chr5:4089555-4089050 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 323 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 177 |
| Conread position: | 374-730 |
| Cow position: | chr5:10483330-10482948 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 36, 175 |
| Conread position: | 431-800 |
| Cow position: | chr5:56856776-56857153 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 262 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 444-730 |
| Cow position: | chr5:6588620-6588920 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 7, 136 |
| Conread position: | 444-730 |
| Cow position: | chr5:14380542-14380249 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 7, 92 |
| Conread position: | 444-730 |
| Cow position: | chr5:27908873-27909172 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 7, 99 |
| Conread position: | 444-742 |
| Cow position: | chr5:3964849-3964540 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 7, 92 |
| Conread position: | 444-754 |
| Cow position: | chr5:54792235-54792551 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 39, 90 |
| Conread position: | 446-752 |
| Cow position: | chr5:4385640-4385330 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 92 |
| Conread position: | 446-869 |
| Cow position: | chr5:46660434-46660013 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 288 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 34, 87 |
| Conread position: | 448-866 |
| Cow position: | chr5:54931825-54932250 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 274 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 35, 93 |
| Conread position: | 452-752 |
| Cow position: | chr5:31101234-31101541 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 31, 47 |
| Conread position: | 463-743 |
| Cow position: | chr5:26078847-26079133 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 96, 20 |
| Conread position: | 466-765 |
| Cow position: | chr5:10919197-10918890 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 82, 71 |
| Conread position: | 478-860 |
| Cow position: | chr5:41357728-41358103 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 96, 15 |
| Conread position: | 514-869 |
| Cow position: | chr5:61278119-61278479 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 44, 22 |
| Conread position: | 536-865 |
| Cow position: | chr5:24999915-25000248 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 69, 59 |
| Conread position: | 600-862 |
| Cow position: | chr5:61272311-61272578 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 17, 98 |
| Conread position: | 630-825 |
| Cow position: | chr5:46629829-46630021 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 648-861 |
| Cow position: | chr5:16103045-16103265 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 99, 46 |
| Conread position: | 654-852 |
| Cow position: | chr5:47074465-47074265 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 34, 41 |
| Conread position: | 674-876 |
| Cow position: | chr5:53626019-53626227 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 78, 20 |
| Conread position: | 684-836 |
| Cow position: | chr5:28951830-28951988 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
Show alignments to all cow chromosomes.