Cow genome map
| Conread name: | Ss1.1-rthg14_d21.5 |
| Conread position: | 1-225 |
| Cow position: | chr6:16635283-16635065 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 17, 58 |
| Conread position: | 1-225 |
| Cow position: | chr6:60931721-60931501 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 18, 89 |
| Conread position: | 1-232 |
| Cow position: | chr6:44550128-44550351 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 18, 40 |
| Conread position: | 1-241 |
| Cow position: | chr6:18973370-18973613 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-242 |
| Cow position: | chr6:15926549-15926792 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 1-283 |
| Cow position: | chr6:7834555-7834278 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 18, 154 |
| Conread position: | 1-285 |
| Cow position: | chr6:1099123-1099407 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 206 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 18, 48 |
| Conread position: | 1-285 |
| Cow position: | chr6:31565122-31565403 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 253 |
| Conread position: | 1-295 |
| Cow position: | chr6:30480138-30479843 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 1-295 |
| Cow position: | chr6:56042682-56042978 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 1-295 |
| Cow position: | chr6:58065774-58065475 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 220 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 1-295 |
| Cow position: | chr6:58601519-58601222 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 267 |
| Conread position: | 1-393 |
| Cow position: | chr6:38271925-38271521 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 248 |
| Conread position: | 2-225 |
| Cow position: | chr6:66193488-66193709 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 16, 27 |
| Conread position: | 3-266 |
| Cow position: | chr6:39910368-39910104 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 16, 76 |
| Conread position: | 3-267 |
| Cow position: | chr6:44149523-44149787 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 16, 36 |
| Conread position: | 3-285 |
| Cow position: | chr6:25215250-25214975 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 3-294 |
| Cow position: | chr6:10644775-10644484 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 140 |
| Conread position: | 3-295 |
| Cow position: | chr6:2375732-2375440 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 16, 114 |
| Conread position: | 3-295 |
| Cow position: | chr6:13105094-13104799 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 16, 140 |
| Conread position: | 3-295 |
| Cow position: | chr6:40276121-40275829 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 16, 114 |
| Conread position: | 5-210 |
| Cow position: | chr6:34027388-34027192 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 14, 69 |
| Conread position: | 5-285 |
| Cow position: | chr6:47042169-47042450 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 5-285 |
| Cow position: | chr6:65842658-65842376 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 37, 82 |
| Conread position: | 5-295 |
| Cow position: | chr6:3276340-3276633 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 5-295 |
| Cow position: | chr6:3487395-3487680 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 27 |
| Conread position: | 5-295 |
| Cow position: | chr6:11724082-11724366 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 14, 109 |
| Conread position: | 5-295 |
| Cow position: | chr6:52694048-52693758 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 14, 59 |
| Conread position: | 5-295 |
| Cow position: | chr6:55542232-55542507 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 14, 178 |
| Conread position: | 6-295 |
| Cow position: | chr6:66232847-66232555 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 13, 43 |
| Conread position: | 7-267 |
| Cow position: | chr6:68027957-68027691 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 7-269 |
| Cow position: | chr6:28104825-28105093 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 12, 190 |
| Conread position: | 7-284 |
| Cow position: | chr6:35875682-35875964 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 7-285 |
| Cow position: | chr6:65882242-65881964 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 12, 166 |
| Conread position: | 7-295 |
| Cow position: | chr6:184749-185041 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 12, 83 |
| Conread position: | 7-295 |
| Cow position: | chr6:39333839-39334128 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 7-295 |
| Cow position: | chr6:58027704-58027416 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 13, 201 |
| Conread position: | 7-359 |
| Cow position: | chr6:1382283-1382638 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 39, 102 |
| Conread position: | 9-266 |
| Cow position: | chr6:11444381-11444640 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 215, 121 |
| Conread position: | 10-206 |
| Cow position: | chr6:36527328-36527131 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 9, 175 |
| Conread position: | 10-230 |
| Cow position: | chr6:63765044-63765262 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 87, 61 |
| Conread position: | 10-237 |
| Cow position: | chr6:703244-703016 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 100 |
| Conread position: | 10-267 |
| Cow position: | chr6:4258726-4258977 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 106, 5 |
| Conread position: | 10-267 |
| Cow position: | chr6:12665292-12665550 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 9, 207 |
| Conread position: | 10-267 |
| Cow position: | chr6:26669836-26670096 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 10-267 |
| Cow position: | chr6:44000088-43999831 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 9, 141 |
| Conread position: | 10-284 |
| Cow position: | chr6:15278784-15279059 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 10-285 |
| Cow position: | chr6:30273868-30274140 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 202 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 9, 79 |
| Conread position: | 10-285 |
| Cow position: | chr6:40553547-40553822 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 9, 64 |
| Conread position: | 10-285 |
| Cow position: | chr6:41190345-41190073 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 176, 0 |
| Conread position: | 10-294 |
| Cow position: | chr6:13848053-13847764 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 9, 24 |
| Conread position: | 10-294 |
| Cow position: | chr6:28133959-28133669 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 9, 233 |
| Conread position: | 10-295 |
| Cow position: | chr6:8760265-8760549 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 10-295 |
| Cow position: | chr6:17047080-17046800 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 9, 195 |
| Conread position: | 10-295 |
| Cow position: | chr6:28169931-28169645 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 10-295 |
| Cow position: | chr6:39438792-39438506 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 10-295 |
| Cow position: | chr6:40866297-40866576 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 9, 116 |
| Conread position: | 10-295 |
| Cow position: | chr6:43792690-43792972 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 188 |
| Conread position: | 13-285 |
| Cow position: | chr6:539007-538742 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 6, 39 |
| Conread position: | 14-215 |
| Cow position: | chr6:17244379-17244579 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 14-285 |
| Cow position: | chr6:65940800-65941071 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 23, 15 |
| Conread position: | 16-222 |
| Cow position: | chr6:32448887-32449093 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 17-285 |
| Cow position: | chr6:34891105-34891373 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-294 |
| Cow position: | chr6:15920871-15920599 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 17-295 |
| Cow position: | chr6:5948758-5949036 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-742 |
| Cow position: | chr6:17597287-17598049 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 211 |
| Conread position: | 18-184 |
| Cow position: | chr6:31636395-31636562 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 18-221 |
| Cow position: | chr6:28113856-28114056 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 16, 32 |
| Conread position: | 18-222 |
| Cow position: | chr6:11871628-11871831 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 18-254 |
| Cow position: | chr6:50646166-50646402 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-266 |
| Cow position: | chr6:330445-330696 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 18-267 |
| Cow position: | chr6:3150280-3150033 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 65, 37 |
| Conread position: | 18-267 |
| Cow position: | chr6:13310339-13310591 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 63 |
| Conread position: | 18-267 |
| Cow position: | chr6:46573589-46573838 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-267 |
| Cow position: | chr6:65820955-65821204 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-291 |
| Cow position: | chr6:914650-914376 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 113 |
| Conread position: | 18-294 |
| Cow position: | chr6:6567608-6567332 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 128, 132 |
| Conread position: | 18-295 |
| Cow position: | chr6:1404568-1404851 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 18-295 |
| Cow position: | chr6:1410634-1410917 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 18-295 |
| Cow position: | chr6:8203203-8202924 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 18-295 |
| Cow position: | chr6:15140159-15140440 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 199 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 18-295 |
| Cow position: | chr6:20560085-20560365 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 202 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 126, 29 |
| Conread position: | 18-295 |
| Cow position: | chr6:24240071-24239799 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 18-295 |
| Cow position: | chr6:27170594-27170316 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 18-295 |
| Cow position: | chr6:27528978-27529263 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 18-295 |
| Cow position: | chr6:44032810-44032534 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 182, 198 |
| Conread position: | 18-295 |
| Cow position: | chr6:51086961-51086684 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-742 |
| Cow position: | chr6:28490546-28491284 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 459 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 101, 118 |
| Conread position: | 19-171 |
| Cow position: | chr6:1535558-1535712 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 21-222 |
| Cow position: | chr6:15478171-15477976 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 92, 10 |
| Conread position: | 22-267 |
| Cow position: | chr6:43618731-43618485 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 24-222 |
| Cow position: | chr6:33991389-33991584 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 24-295 |
| Cow position: | chr6:6474851-6475126 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 18, 127 |
| Conread position: | 26-295 |
| Cow position: | chr6:69143634-69143374 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 26-413 |
| Cow position: | chr6:7178282-7178668 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 188 |
| Conread position: | 27-229 |
| Cow position: | chr6:54180016-54179813 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 72, 86 |
| Conread position: | 33-257 |
| Cow position: | chr6:19492302-19492085 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 33-295 |
| Cow position: | chr6:34443917-34443655 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 106, 6 |
| Conread position: | 34-267 |
| Cow position: | chr6:16052883-16052649 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 41-267 |
| Cow position: | chr6:40252653-40252430 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 41-294 |
| Cow position: | chr6:33899249-33899495 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 41-294 |
| Cow position: | chr6:59918080-59918333 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 41-295 |
| Cow position: | chr6:1821630-1821885 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 41-295 |
| Cow position: | chr6:13316476-13316730 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 16, 71 |
| Conread position: | 41-295 |
| Cow position: | chr6:21973650-21973398 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 13, 166 |
| Conread position: | 41-295 |
| Cow position: | chr6:51715532-51715281 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 42-232 |
| Cow position: | chr6:6157534-6157349 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 44-295 |
| Cow position: | chr6:40316381-40316122 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 52-852 |
| Cow position: | chr6:8021865-8021046 (view UCSC Genome Browser custom track) |
| Alignm length: | 841 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 140 |
| Conread position: | 53-267 |
| Cow position: | chr6:7140480-7140692 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 53-285 |
| Cow position: | chr6:50634921-50634698 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 53-295 |
| Cow position: | chr6:185485-185727 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 59-296 |
| Cow position: | chr6:34004426-34004655 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 196, 20 |
| Conread position: | 62-268 |
| Cow position: | chr6:25793839-25794045 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 62-295 |
| Cow position: | chr6:51731071-51730839 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 77-283 |
| Cow position: | chr6:64716945-64716739 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 89-359 |
| Cow position: | chr6:15022155-15021889 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 21 |
| Conread position: | 94-295 |
| Cow position: | chr6:14389520-14389319 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 96-285 |
| Cow position: | chr6:27471539-27471354 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 96-295 |
| Cow position: | chr6:12530426-12530231 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 20, 13 |
| Conread position: | 154-295 |
| Cow position: | chr6:38900291-38900432 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 292-861 |
| Cow position: | chr6:66542364-66541735 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 411 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 60, 273 |
| Conread position: | 293-700 |
| Cow position: | chr6:12665599-12666041 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 291 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 69, 47 |
| Conread position: | 293-730 |
| Cow position: | chr6:69221489-69221968 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 310 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 58, 278 |
| Conread position: | 293-742 |
| Cow position: | chr6:2375419-2374930 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 323 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 58, 47 |
| Conread position: | 293-742 |
| Cow position: | chr6:40252381-40251893 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 322 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 59, 47 |
| Conread position: | 293-747 |
| Cow position: | chr6:330745-331239 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 326 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 65, 47 |
| Conread position: | 293-754 |
| Cow position: | chr6:15140461-15140954 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 329 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 65, 275 |
| Conread position: | 293-785 |
| Cow position: | chr6:38900453-38900983 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 25 |
| Conread position: | 371-817 |
| Cow position: | chr6:31565567-31566041 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 328 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 51, 39 |
| Conread position: | 372-594 |
| Cow position: | chr6:6544838-6544601 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 40, 202 |
| Conread position: | 372-855 |
| Cow position: | chr6:39909153-39908648 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 320 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 38, 177 |
| Conread position: | 372-875 |
| Cow position: | chr6:8751918-8752427 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 346 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 377-730 |
| Cow position: | chr6:65821504-65821884 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 45, 33 |
| Conread position: | 442-683 |
| Cow position: | chr6:40315930-40315678 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 29 |
| Conread position: | 442-871 |
| Cow position: | chr6:15477453-15477006 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 57 |
| Conread position: | 444-714 |
| Cow position: | chr6:13847567-13847283 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 7, 257 |
| Conread position: | 444-742 |
| Cow position: | chr6:1411402-1411710 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 7, 92 |
| Conread position: | 444-742 |
| Cow position: | chr6:27170121-27169811 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 7, 90 |
| Conread position: | 444-742 |
| Cow position: | chr6:40275629-40275318 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 7, 92 |
| Conread position: | 444-742 |
| Cow position: | chr6:68027331-68027022 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 7, 92 |
| Conread position: | 444-743 |
| Cow position: | chr6:13944448-13944136 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 7, 92 |
| Conread position: | 444-855 |
| Cow position: | chr6:44150015-44150435 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 7, 92 |
| Conread position: | 446-731 |
| Cow position: | chr6:28275521-28275225 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 108, 83 |
| Conread position: | 446-799 |
| Cow position: | chr6:65928509-65928143 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 243 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 450-754 |
| Cow position: | chr6:58027288-58026979 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 17, 85 |
| Conread position: | 452-727 |
| Cow position: | chr6:14852045-14852332 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 25, 89 |
| Conread position: | 453-684 |
| Cow position: | chr6:26670337-26670580 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 81 |
| Conread position: | 453-742 |
| Cow position: | chr6:43618246-43617945 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 30, 82 |
| Conread position: | 453-855 |
| Cow position: | chr6:16052411-16052001 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 247 |
| Conread position: | 455-742 |
| Cow position: | chr6:13104586-13104288 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 28, 86 |
| Conread position: | 460-862 |
| Cow position: | chr6:10644078-10643665 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 23, 81 |
| Conread position: | 461-755 |
| Cow position: | chr6:6567122-6566830 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 16, 76 |
| Conread position: | 466-731 |
| Cow position: | chr6:13316988-13317257 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 100, 64 |
| Conread position: | 466-732 |
| Cow position: | chr6:30479623-30479349 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 94, 70 |
| Conread position: | 497-753 |
| Cow position: | chr6:3544972-3544710 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 57, 38 |
| Conread position: | 529-839 |
| Cow position: | chr6:17245099-17245411 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 32, 23 |
| Conread position: | 643-861 |
| Cow position: | chr6:35434473-35434261 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 26, 5 |
| Conread position: | 648-822 |
| Cow position: | chr6:1383144-1383319 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 63, 49 |
| Conread position: | 648-874 |
| Cow position: | chr6:42616791-42616558 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 89, 21 |
| Conread position: | 698-871 |
| Cow position: | chr6:536404-536222 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 111 |
Show alignments to all cow chromosomes.