Cow genome map

Conread name: Ss1.1-rthg15_j20.5

Conread position: 1-529
Cow position:
Alignm length: 529
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-540
Cow position:
Alignm length: 540
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-541
Cow position:
Alignm length: 543
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 169

Conread position: 1-568
Cow position:
Alignm length: 573
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 56

Conread position: 1-568
Cow position:
Alignm length: 570
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 504, 496

Conread position: 1-569
Cow position:
Alignm length: 570
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 418, 422

Conread position: 1-569
Cow position:
Alignm length: 570
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 546, 551

Conread position: 1-599
Cow position:
Alignm length: 603
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 568, 534

Conread position: 1-600
Cow position:
Alignm length: 601
Alignm identity: 543
Alignm E-value: 0
Alignm gaps (pig, cow): 568, 0

Conread position: 2-351
Cow position:
Alignm length: 350
Alignm identity: 211
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 2-436
Cow position:
Alignm length: 439
Alignm identity: 273
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 85, 75

Conread position: 2-496
Cow position:
Alignm length: 496
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 349, 345

Conread position: 2-541
Cow position:
Alignm length: 541
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 504, 498

Conread position: 2-567
Cow position:
Alignm length: 569
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 420, 414

Conread position: 2-568
Cow position:
Alignm length: 568
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 551, 544

Conread position: 4-569
Cow position:
Alignm length: 569
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 57

Conread position: 7-297
Cow position:
Alignm length: 291
Alignm identity: 187
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 268, 0

Conread position: 7-498
Cow position:
Alignm length: 494
Alignm identity: 302
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 36, 0

Conread position: 7-567
Cow position:
Alignm length: 567
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 169

Conread position: 8-352
Cow position:
Alignm length: 349
Alignm identity: 230
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 61, 82

Conread position: 8-361
Cow position:
Alignm length: 356
Alignm identity: 226
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 163, 156

Conread position: 8-396
Cow position:
Alignm length: 391
Alignm identity: 255
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 228, 243

Conread position: 8-398
Cow position:
Alignm length: 391
Alignm identity: 249
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 8-435
Cow position:
Alignm length: 433
Alignm identity: 271
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 69, 87

Conread position: 8-438
Cow position:
Alignm length: 431
Alignm identity: 271
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 8-474
Cow position:
Alignm length: 472
Alignm identity: 297
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 72, 86

Conread position: 8-480
Cow position:
Alignm length: 476
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 156

Conread position: 8-492
Cow position:
Alignm length: 488
Alignm identity: 295
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 58, 69

Conread position: 8-495
Cow position:
Alignm length: 489
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 367

Conread position: 8-532
Cow position:
Alignm length: 527
Alignm identity: 319
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 353, 409

Conread position: 8-536
Cow position:
Alignm length: 530
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 144

Conread position: 8-537
Cow position:
Alignm length: 534
Alignm identity: 329
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 162, 150

Conread position: 8-537
Cow position:
Alignm length: 533
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 43

Conread position: 8-538
Cow position:
Alignm length: 537
Alignm identity: 337
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 55, 82

Conread position: 8-538
Cow position:
Alignm length: 533
Alignm identity: 318
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 79, 72

Conread position: 8-538
Cow position:
Alignm length: 533
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 159

Conread position: 8-538
Cow position:
Alignm length: 533
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 161

Conread position: 8-541
Cow position:
Alignm length: 535
Alignm identity: 331
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 411, 364

Conread position: 8-541
Cow position:
Alignm length: 537
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 245

Conread position: 8-541
Cow position:
Alignm length: 537
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 55

Conread position: 8-541
Cow position:
Alignm length: 540
Alignm identity: 333
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 151, 142

Conread position: 8-541
Cow position:
Alignm length: 534
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-541
Cow position:
Alignm length: 535
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 222

Conread position: 8-541
Cow position:
Alignm length: 534
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-565
Cow position:
Alignm length: 564
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 87

Conread position: 8-567
Cow position:
Alignm length: 561
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 223

Conread position: 8-568
Cow position:
Alignm length: 562
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 414, 408

Conread position: 8-568
Cow position:
Alignm length: 561
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-568
Cow position:
Alignm length: 564
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 151

Conread position: 8-568
Cow position:
Alignm length: 563
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 539, 526

Conread position: 8-569
Cow position:
Alignm length: 563
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 414, 408

Conread position: 8-569
Cow position:
Alignm length: 564
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 161

Conread position: 8-569
Cow position:
Alignm length: 564
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 223

Conread position: 9-482
Cow position:
Alignm length: 477
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 155

Conread position: 9-542
Cow position:
Alignm length: 534
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 521, 0

Conread position: 9-560
Cow position:
Alignm length: 553
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 542, 521

Conread position: 9-568
Cow position:
Alignm length: 560
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 9-568
Cow position:
Alignm length: 561
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 538, 543

Conread position: 9-568
Cow position:
Alignm length: 562
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 320

Conread position: 10-537
Cow position:
Alignm length: 529
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 453, 457

Conread position: 10-541
Cow position:
Alignm length: 535
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 239

Conread position: 10-541
Cow position:
Alignm length: 532
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-541
Cow position:
Alignm length: 533
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 452, 458

Conread position: 10-541
Cow position:
Alignm length: 536
Alignm identity: 329
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 137, 148

Conread position: 10-541
Cow position:
Alignm length: 532
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-541
Cow position:
Alignm length: 532
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-568
Cow position:
Alignm length: 561
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 76

Conread position: 11-459
Cow position:
Alignm length: 452
Alignm identity: 288
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 150, 158

Conread position: 11-481
Cow position:
Alignm length: 477
Alignm identity: 290
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 52, 73

Conread position: 11-482
Cow position:
Alignm length: 477
Alignm identity: 304
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 76, 66

Conread position: 11-537
Cow position:
Alignm length: 530
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 153

Conread position: 11-568
Cow position:
Alignm length: 561
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 315

Conread position: 11-569
Cow position:
Alignm length: 561
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 318

Conread position: 11-569
Cow position:
Alignm length: 561
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 318

Conread position: 12-399
Cow position:
Alignm length: 389
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 152

Conread position: 12-481
Cow position:
Alignm length: 473
Alignm identity: 295
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 159, 152

Conread position: 12-519
Cow position:
Alignm length: 510
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 152

Conread position: 12-537
Cow position:
Alignm length: 528
Alignm identity: 319
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 158, 152

Conread position: 12-540
Cow position:
Alignm length: 531
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 238

Conread position: 12-558
Cow position:
Alignm length: 551
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 153

Conread position: 12-567
Cow position:
Alignm length: 559
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 65

Conread position: 12-567
Cow position:
Alignm length: 557
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 541, 537

Conread position: 12-567
Cow position:
Alignm length: 557
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 535, 540

Conread position: 12-567
Cow position:
Alignm length: 558
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 539, 522

Conread position: 12-567
Cow position:
Alignm length: 556
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-568
Cow position:
Alignm length: 558
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 541, 536

Conread position: 12-568
Cow position:
Alignm length: 558
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 541, 536

Conread position: 12-568
Cow position:
Alignm length: 558
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 219

Conread position: 12-568
Cow position:
Alignm length: 558
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 242

Conread position: 13-531
Cow position:
Alignm length: 523
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 81

Conread position: 13-537
Cow position:
Alignm length: 526
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 50

Conread position: 13-568
Cow position:
Alignm length: 559
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 217

Conread position: 13-568
Cow position:
Alignm length: 558
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 383, 408

Conread position: 14-484
Cow position:
Alignm length: 475
Alignm identity: 299
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 74, 70

Conread position: 14-495
Cow position:
Alignm length: 486
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 39

Conread position: 14-527
Cow position:
Alignm length: 518
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 66

Conread position: 14-531
Cow position:
Alignm length: 519
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 146

Conread position: 14-538
Cow position:
Alignm length: 527
Alignm identity: 322
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 323, 312

Conread position: 14-538
Cow position:
Alignm length: 526
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 402, 409

Conread position: 14-567
Cow position:
Alignm length: 558
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 51

Conread position: 14-569
Cow position:
Alignm length: 556
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 16-568
Cow position:
Alignm length: 554
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 531, 546

Conread position: 20-447
Cow position:
Alignm length: 430
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 318

Conread position: 20-483
Cow position:
Alignm length: 469
Alignm identity: 293
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 40, 36

Conread position: 20-483
Cow position:
Alignm length: 465
Alignm identity: 281
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 320, 25

Conread position: 20-528
Cow position:
Alignm length: 511
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 409

Conread position: 20-541
Cow position:
Alignm length: 523
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 425, 0

Conread position: 20-541
Cow position:
Alignm length: 529
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 60

Conread position: 22-538
Cow position:
Alignm length: 518
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 81

Conread position: 22-569
Cow position:
Alignm length: 550
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 15

Conread position: 23-559
Cow position:
Alignm length: 538
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 524, 0

Conread position: 23-567
Cow position:
Alignm length: 551
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 51

Conread position: 25-476
Cow position:
Alignm length: 455
Alignm identity: 289
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 63, 52

Conread position: 28-568
Cow position:
Alignm length: 548
Alignm identity: 338
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 38, 25

Conread position: 32-541
Cow position:
Alignm length: 512
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 294

Conread position: 38-558
Cow position:
Alignm length: 523
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 82

Conread position: 70-540
Cow position:
Alignm length: 475
Alignm identity: 305
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 45, 50

Conread position: 76-568
Cow position:
Alignm length: 496
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 62

Conread position: 83-567
Cow position:
Alignm length: 486
Alignm identity: 299
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 470, 466

Conread position: 85-498
Cow position:
Alignm length: 415
Alignm identity: 258
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 14, 7

Conread position: 86-538
Cow position:
Alignm length: 455
Alignm identity: 266
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 250, 243

Conread position: 86-538
Cow position:
Alignm length: 458
Alignm identity: 294
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 78, 86

Conread position: 86-539
Cow position:
Alignm length: 456
Alignm identity: 269
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 144, 150

Conread position: 92-342
Cow position:
Alignm length: 253
Alignm identity: 170
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 73, 89

Conread position: 93-536
Cow position:
Alignm length: 448
Alignm identity: 277
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 15, 9

Conread position: 98-568
Cow position:
Alignm length: 476
Alignm identity: 290
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 74, 66

Conread position: 98-568
Cow position:
Alignm length: 472
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 61

Conread position: 99-568
Cow position:
Alignm length: 471
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 451, 141

Conread position: 103-531
Cow position:
Alignm length: 430
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 212

Conread position: 128-483
Cow position:
Alignm length: 359
Alignm identity: 229
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 119, 75

Conread position: 131-496
Cow position:
Alignm length: 370
Alignm identity: 235
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 190, 207

Conread position: 170-565
Cow position:
Alignm length: 399
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 81

Conread position: 178-459
Cow position:
Alignm length: 287
Alignm identity: 195
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 74, 70

Conread position: 186-528
Cow position:
Alignm length: 343
Alignm identity: 207
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 186-528
Cow position:
Alignm length: 345
Alignm identity: 229
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 122, 130

Conread position: 215-528
Cow position:
Alignm length: 317
Alignm identity: 203
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 106, 124

Conread position: 272-567
Cow position:
Alignm length: 298
Alignm identity: 196
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 150, 144

Show alignments to all cow chromosomes.