Cow genome map

Conread name: Ss1.1-rthg15_j20.5

Conread position: 1-459
Cow position: chr17:22589786-22589328 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 277
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 306, 315

Conread position: 1-461
Cow position: chr17:22551948-22551487 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 285
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 420, 415

Conread position: 1-537
Cow position: chr17:22552200-22551664 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 168

Conread position: 2-537
Cow position: chr17:22552787-22552252 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-568
Cow position: chr17:22473239-22473797 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 343
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 240, 11

Conread position: 7-392
Cow position: chr17:22452059-22451674 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 238

Conread position: 7-538
Cow position: chr17:22553118-22552587 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 241

Conread position: 7-541
Cow position: chr17:22552614-22552080 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 328
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 414, 404

Conread position: 7-541
Cow position: chr17:22590200-22589666 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 308

Conread position: 8-293
Cow position: chr17:22498820-22498535 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 184
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 65, 59

Conread position: 8-531
Cow position: chr17:22552949-22552426 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 224

Conread position: 8-537
Cow position: chr17:22552025-22551496 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 327
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 148, 129

Conread position: 8-538
Cow position: chr17:22499156-22498626 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 328
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 73, 78

Conread position: 8-538
Cow position: chr17:22552445-22551915 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 164

Conread position: 8-538
Cow position: chr17:22552697-22552167 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 57

Conread position: 8-540
Cow position: chr17:22473405-22473938 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 519, 0

Conread position: 8-541
Cow position: chr17:22452310-22451777 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 45

Conread position: 8-541
Cow position: chr17:22499072-22498539 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 337
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 61, 57

Conread position: 8-541
Cow position: chr17:22552277-22551744 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 224

Conread position: 8-541
Cow position: chr17:22589947-22589414 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 340
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 173, 165

Conread position: 8-558
Cow position: chr17:22499324-22498774 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 224

Conread position: 8-567
Cow position: chr17:22590115-22589556 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 70

Conread position: 9-487
Cow position: chr17:22589694-22589216 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 299
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 67, 54

Conread position: 9-568
Cow position: chr17:22473322-22473881 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 126

Conread position: 10-538
Cow position: chr17:22552527-22551999 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 451, 457

Conread position: 11-492
Cow position: chr17:41440965-41440484 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 291
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 81, 66

Conread position: 11-537
Cow position: chr17:22499237-22498711 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 325
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 160, 153

Conread position: 14-451
Cow position: chr17:22552859-22552422 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 271
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 14-462
Cow position: chr17:22498982-22498534 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 277
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 236, 241

Conread position: 14-541
Cow position: chr17:22552103-22551576 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 219

Conread position: 14-566
Cow position: chr17:22452388-22451836 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 158

Conread position: 20-409
Cow position: chr17:22589599-22589210 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 255
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 52, 45

Conread position: 21-567
Cow position: chr17:22553020-22552474 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 228

Conread position: 22-541
Cow position: chr17:22590269-22589750 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 319
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 439, 445

Conread position: 23-574
Cow position: chr17:22499393-22498842 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 331
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 399, 393

Conread position: 71-541
Cow position: chr17:22590304-22589834 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 295
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 166, 161

Conread position: 87-541
Cow position: chr17:22553122-22552668 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 279
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 9, 34

Conread position: 121-541
Cow position: chr17:22499379-22498959 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 269
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 218, 207

Conread position: 158-536
Cow position: chr17:22452412-22452034 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 246
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 265, 258

Conread position: 170-569
Cow position: chr17:22590289-22589890 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 253
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 137, 144

Conread position: 187-519
Cow position: chr17:22499395-22499065 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 209
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 236, 9

Conread position: 250-559
Cow position: chr17:22553127-22552817 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 195
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 114, 119

Show alignments to all cow chromosomes.