Cow genome map

Conread name: Ss1.1-rthg15_j20.5

Conread position: 1-278
Cow position:
Alignm length: 280
Alignm identity: 179
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 70, 57

Conread position: 1-427
Cow position:
Alignm length: 429
Alignm identity: 265
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 247, 253

Conread position: 1-541
Cow position:
Alignm length: 544
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 253

Conread position: 2-396
Cow position:
Alignm length: 400
Alignm identity: 259
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 67, 60

Conread position: 2-537
Cow position:
Alignm length: 539
Alignm identity: 339
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 169, 162

Conread position: 2-541
Cow position:
Alignm length: 541
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 413, 420

Conread position: 2-541
Cow position:
Alignm length: 543
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 335

Conread position: 5-541
Cow position:
Alignm length: 538
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 11

Conread position: 7-448
Cow position:
Alignm length: 443
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 415, 403

Conread position: 7-538
Cow position:
Alignm length: 536
Alignm identity: 329
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 231, 168

Conread position: 7-541
Cow position:
Alignm length: 537
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 227

Conread position: 8-289
Cow position:
Alignm length: 282
Alignm identity: 187
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 8-399
Cow position:
Alignm length: 392
Alignm identity: 241
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 8-436
Cow position:
Alignm length: 430
Alignm identity: 273
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 233, 245

Conread position: 8-445
Cow position:
Alignm length: 442
Alignm identity: 276
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 45, 63

Conread position: 8-450
Cow position:
Alignm length: 444
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 384, 395

Conread position: 8-453
Cow position:
Alignm length: 447
Alignm identity: 270
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 297, 304

Conread position: 8-453
Cow position:
Alignm length: 449
Alignm identity: 282
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 239, 216

Conread position: 8-460
Cow position:
Alignm length: 455
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 216

Conread position: 8-468
Cow position:
Alignm length: 464
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 124

Conread position: 8-498
Cow position:
Alignm length: 493
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 319

Conread position: 8-532
Cow position:
Alignm length: 530
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 112

Conread position: 8-537
Cow position:
Alignm length: 531
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 414, 408

Conread position: 8-537
Cow position:
Alignm length: 531
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 413, 402

Conread position: 8-537
Cow position:
Alignm length: 531
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 413

Conread position: 8-538
Cow position:
Alignm length: 531
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-539
Cow position:
Alignm length: 534
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 127

Conread position: 8-539
Cow position:
Alignm length: 534
Alignm identity: 329
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 243, 116

Conread position: 8-541
Cow position:
Alignm length: 536
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 156

Conread position: 8-541
Cow position:
Alignm length: 540
Alignm identity: 335
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 56, 11

Conread position: 8-541
Cow position:
Alignm length: 538
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 57

Conread position: 8-541
Cow position:
Alignm length: 537
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 223

Conread position: 8-541
Cow position:
Alignm length: 538
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 216

Conread position: 8-558
Cow position:
Alignm length: 554
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 164

Conread position: 8-566
Cow position:
Alignm length: 561
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 408, 413

Conread position: 8-567
Cow position:
Alignm length: 562
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 156

Conread position: 8-567
Cow position:
Alignm length: 564
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 240

Conread position: 8-567
Cow position:
Alignm length: 561
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 414, 408

Conread position: 8-569
Cow position:
Alignm length: 566
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 175

Conread position: 8-571
Cow position:
Alignm length: 568
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 227

Conread position: 8-573
Cow position:
Alignm length: 570
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 306

Conread position: 8-575
Cow position:
Alignm length: 569
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 390, 171

Conread position: 8-596
Cow position:
Alignm length: 594
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 223

Conread position: 9-509
Cow position:
Alignm length: 509
Alignm identity: 324
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 45, 6

Conread position: 10-538
Cow position:
Alignm length: 532
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 240

Conread position: 10-566
Cow position:
Alignm length: 560
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 214

Conread position: 10-567
Cow position:
Alignm length: 562
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 305

Conread position: 11-519
Cow position:
Alignm length: 513
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 158

Conread position: 11-540
Cow position:
Alignm length: 534
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 79

Conread position: 11-541
Cow position:
Alignm length: 537
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 147

Conread position: 12-537
Cow position:
Alignm length: 528
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 91

Conread position: 13-452
Cow position:
Alignm length: 441
Alignm identity: 279
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 158, 6

Conread position: 13-541
Cow position:
Alignm length: 532
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 236

Conread position: 14-365
Cow position:
Alignm length: 353
Alignm identity: 229
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 309, 45

Conread position: 14-525
Cow position:
Alignm length: 517
Alignm identity: 326
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 233, 219

Conread position: 14-532
Cow position:
Alignm length: 522
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 28

Conread position: 14-538
Cow position:
Alignm length: 527
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 321, 316

Conread position: 14-541
Cow position:
Alignm length: 534
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 219

Conread position: 14-541
Cow position:
Alignm length: 532
Alignm identity: 328
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 239, 216

Conread position: 14-541
Cow position:
Alignm length: 529
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 302

Conread position: 14-541
Cow position:
Alignm length: 530
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 408, 397

Conread position: 19-538
Cow position:
Alignm length: 521
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 403, 397

Conread position: 20-568
Cow position:
Alignm length: 549
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 0

Conread position: 21-538
Cow position:
Alignm length: 519
Alignm identity: 316
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 387, 18

Conread position: 21-541
Cow position:
Alignm length: 525
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 162

Conread position: 22-541
Cow position:
Alignm length: 522
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 20

Conread position: 22-541
Cow position:
Alignm length: 521
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 442, 456

Conread position: 24-568
Cow position:
Alignm length: 547
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 165

Conread position: 33-574
Cow position:
Alignm length: 546
Alignm identity: 337
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 119, 59

Conread position: 73-558
Cow position:
Alignm length: 496
Alignm identity: 318
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 12, 79

Conread position: 75-449
Cow position:
Alignm length: 378
Alignm identity: 233
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 264, 29

Conread position: 86-541
Cow position:
Alignm length: 458
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 145

Conread position: 97-522
Cow position:
Alignm length: 429
Alignm identity: 277
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 220, 21

Conread position: 98-568
Cow position:
Alignm length: 476
Alignm identity: 295
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 9, 25

Conread position: 100-568
Cow position:
Alignm length: 473
Alignm identity: 279
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 96, 6

Conread position: 104-541
Cow position:
Alignm length: 440
Alignm identity: 279
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 144, 148

Conread position: 104-567
Cow position:
Alignm length: 468
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 45

Conread position: 174-541
Cow position:
Alignm length: 369
Alignm identity: 233
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 134, 25

Conread position: 176-567
Cow position:
Alignm length: 395
Alignm identity: 258
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 240, 247

Conread position: 188-567
Cow position:
Alignm length: 382
Alignm identity: 252
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 117, 127

Conread position: 190-558
Cow position:
Alignm length: 370
Alignm identity: 232
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 25, 20

Conread position: 254-568
Cow position:
Alignm length: 316
Alignm identity: 199
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 169, 79

Show alignments to all cow chromosomes.