Cow genome map
| Conread name: | Ss1.1-rthg15_j20.5 |
| Conread position: | 1-278 |
| Cow position: | chr19:23614841-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 70, 57 |
| Conread position: | 1-427 |
| Cow position: | chr19:14948402-14947978 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 247, 253 |
| Conread position: | 1-541 |
| Cow position: | chr19:23649703-23650243 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 253 |
| Conread position: | 2-396 |
| Cow position: | chr19:20678269-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 259 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 67, 60 |
| Conread position: | 2-537 |
| Cow position: | chr19:14959587-14959068 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 339 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 169, 162 |
| Conread position: | 2-541 |
| Cow position: | chr19:23614170-23614709 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 420 |
| Conread position: | 2-541 |
| Cow position: | chr19:23649284-23649823 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 335 |
| Conread position: | 5-541 |
| Cow position: | chr19:20677517-20678052 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 411, 11 |
| Conread position: | 7-448 |
| Cow position: | chr19:23650045-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 415, 403 |
| Conread position: | 7-538 |
| Cow position: | chr19:14959986-14959471 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 329 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 231, 168 |
| Conread position: | 7-541 |
| Cow position: | chr19:23614007-23614541 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 227 |
| Conread position: | 8-289 |
| Cow position: | chr19:23597437-23597718 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-399 |
| Cow position: | chr19:20635477-20635086 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-436 |
| Cow position: | chr19:14940648-14941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 273 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 233, 245 |
| Conread position: | 8-445 |
| Cow position: | chr19:14959254-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 45, 63 |
| Conread position: | 8-450 |
| Cow position: | chr19:23597269-23597711 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 395 |
| Conread position: | 8-453 |
| Cow position: | chr19:20635393-20634951 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 270 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 297, 304 |
| Conread position: | 8-453 |
| Cow position: | chr19:20678359-20678801 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 239, 216 |
| Conread position: | 8-460 |
| Cow position: | chr19:23613924-23614376 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 216 |
| Conread position: | 8-468 |
| Cow position: | chr19:23649878-23650338 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 124 |
| Conread position: | 8-498 |
| Cow position: | chr19:14940564-14941054 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 319 |
| Conread position: | 8-532 |
| Cow position: | chr19:14940312-14940836 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 112 |
| Conread position: | 8-537 |
| Cow position: | chr19:14940144-14940673 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 414, 408 |
| Conread position: | 8-537 |
| Cow position: | chr19:23597101-23597630 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 402 |
| Conread position: | 8-537 |
| Cow position: | chr19:23614344-23614873 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 413 |
| Conread position: | 8-538 |
| Cow position: | chr19:14940228-14940758 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-539 |
| Cow position: | chr19:23613420-23613951 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 127 |
| Conread position: | 8-539 |
| Cow position: | chr19:43570394-43569873 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 329 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 243, 116 |
| Conread position: | 8-541 |
| Cow position: | chr19:14940060-14940593 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 156 |
| Conread position: | 8-541 |
| Cow position: | chr19:14959663-14959141 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 335 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 56, 11 |
| Conread position: | 8-541 |
| Cow position: | chr19:20677939-20678472 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 57 |
| Conread position: | 8-541 |
| Cow position: | chr19:20678023-20678556 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 223 |
| Conread position: | 8-541 |
| Cow position: | chr19:23614092-23614625 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 216 |
| Conread position: | 8-558 |
| Cow position: | chr19:23613588-23614138 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 164 |
| Conread position: | 8-566 |
| Cow position: | chr19:23613672-23614230 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 413 |
| Conread position: | 8-567 |
| Cow position: | chr19:14940396-14940955 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 156 |
| Conread position: | 8-567 |
| Cow position: | chr19:23614512-23615071 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 240 |
| Conread position: | 8-567 |
| Cow position: | chr19:23649458-23650017 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 414, 408 |
| Conread position: | 8-569 |
| Cow position: | chr19:20677855-20678416 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 175 |
| Conread position: | 8-571 |
| Cow position: | chr19:20677771-20678337 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 227 |
| Conread position: | 8-573 |
| Cow position: | chr19:43570236-43569676 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 306 |
| Conread position: | 8-575 |
| Cow position: | chr19:14960319-14959756 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 171 |
| Conread position: | 8-596 |
| Cow position: | chr19:23614596-23615179 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 223 |
| Conread position: | 9-509 |
| Cow position: | chr19:14915952-14916449 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 324 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 45, 6 |
| Conread position: | 10-538 |
| Cow position: | chr19:14940482-14941010 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 240 |
| Conread position: | 10-566 |
| Cow position: | chr19:23613506-23614062 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 214 |
| Conread position: | 10-567 |
| Cow position: | chr19:23614430-23614987 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 305 |
| Conread position: | 11-519 |
| Cow position: | chr19:23597188-23597696 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 158 |
| Conread position: | 11-540 |
| Cow position: | chr19:23649545-23650074 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 79 |
| Conread position: | 11-541 |
| Cow position: | chr19:23649797-23650327 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 147 |
| Conread position: | 12-537 |
| Cow position: | chr19:23596940-23597462 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 91 |
| Conread position: | 13-452 |
| Cow position: | chr19:14948471-14948035 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 279 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 158, 6 |
| Conread position: | 13-541 |
| Cow position: | chr19:23613845-23614373 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 236 |
| Conread position: | 14-365 |
| Cow position: | chr19:14959164-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 309, 45 |
| Conread position: | 14-525 |
| Cow position: | chr19:20635555-20635044 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 326 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 233, 219 |
| Conread position: | 14-532 |
| Cow position: | chr19:23649968-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 14-538 |
| Cow position: | chr19:23613762-23614286 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 316 |
| Conread position: | 14-541 |
| Cow position: | chr19:20635639-20635112 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 219 |
| Conread position: | 14-541 |
| Cow position: | chr19:20677441-20677968 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 328 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 239, 216 |
| Conread position: | 14-541 |
| Cow position: | chr19:20678197-20678722 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 302 |
| Conread position: | 14-541 |
| Cow position: | chr19:23649632-23650159 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 397 |
| Conread position: | 19-538 |
| Cow position: | chr19:14939987-14940506 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 403, 397 |
| Conread position: | 20-568 |
| Cow position: | chr19:14960475-14959929 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 0 |
| Conread position: | 21-538 |
| Cow position: | chr19:20635715-20635199 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 316 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 387, 18 |
| Conread position: | 21-541 |
| Cow position: | chr19:20678120-20678640 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 162 |
| Conread position: | 22-541 |
| Cow position: | chr19:23613350-23613869 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 20 |
| Conread position: | 22-541 |
| Cow position: | chr19:23649388-23649907 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 442, 456 |
| Conread position: | 24-568 |
| Cow position: | chr19:23596868-23597409 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 165 |
| Conread position: | 33-574 |
| Cow position: | chr19:43570452-43569922 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 337 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 119, 59 |
| Conread position: | 73-558 |
| Cow position: | chr19:43570257-43569770 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 318 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 12, 79 |
| Conread position: | 75-449 |
| Cow position: | chr19:14959680-14959308 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 264, 29 |
| Conread position: | 86-541 |
| Cow position: | chr19:23597095-23597550 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 145 |
| Conread position: | 97-522 |
| Cow position: | chr19:14948471-14948049 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 220, 21 |
| Conread position: | 98-568 |
| Cow position: | chr19:20677441-20677911 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 9, 25 |
| Conread position: | 100-568 |
| Cow position: | chr19:14939819-14940284 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 279 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 96, 6 |
| Conread position: | 104-541 |
| Cow position: | chr19:14939988-14940425 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 279 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 144, 148 |
| Conread position: | 104-567 |
| Cow position: | chr19:23649302-23649765 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 45 |
| Conread position: | 174-541 |
| Cow position: | chr19:20635729-20635364 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 134, 25 |
| Conread position: | 176-567 |
| Cow position: | chr19:23649290-23649681 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 258 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 240, 247 |
| Conread position: | 188-567 |
| Cow position: | chr19:14939988-14940367 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 252 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 117, 127 |
| Conread position: | 190-558 |
| Cow position: | chr19:23613350-23613718 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 25, 20 |
| Conread position: | 254-568 |
| Cow position: | chr19:14948484-14948171 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 169, 79 |
Show alignments to all cow chromosomes.