Cow genome map
| Conread name: | Ss1.1-rthg15_j20.5 |
| Conread position: | 1-538 |
| Cow position: | chr2:86465245-86465782 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 332 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 70, 63 |
| Conread position: | 2-480 |
| Cow position: | chr2:86465414-86465892 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 166, 197 |
| Conread position: | 3-538 |
| Cow position: | chr2:78754814-78755347 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 12 |
| Conread position: | 6-438 |
| Cow position: | chr2:82800014-82800446 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 71 |
| Conread position: | 6-471 |
| Cow position: | chr2:48689557-48689093 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 293 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 29, 12 |
| Conread position: | 7-541 |
| Cow position: | chr2:78755404-78755935 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 320 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 137, 109 |
| Conread position: | 8-356 |
| Cow position: | chr2:82800100-82800448 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-399 |
| Cow position: | chr2:48689471-48689081 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 8-453 |
| Cow position: | chr2:5874944-5874499 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 273 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 64, 82 |
| Conread position: | 8-459 |
| Cow position: | chr2:78755906-78756355 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 282 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 138, 208 |
| Conread position: | 8-484 |
| Cow position: | chr2:86465672-86466148 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 244, 224 |
| Conread position: | 8-538 |
| Cow position: | chr2:82799764-82800294 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-538 |
| Cow position: | chr2:86465589-86466118 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 327 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 82, 5 |
| Conread position: | 8-541 |
| Cow position: | chr2:82799596-82800129 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 49 |
| Conread position: | 8-541 |
| Cow position: | chr2:82799848-82800381 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 156 |
| Conread position: | 8-569 |
| Cow position: | chr2:78754666-78755211 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 354 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 224, 24 |
| Conread position: | 8-569 |
| Cow position: | chr2:78754986-78755545 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 344 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 330, 323 |
| Conread position: | 9-532 |
| Cow position: | chr2:78755823-78756345 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 313 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 47, 87 |
| Conread position: | 10-453 |
| Cow position: | chr2:78754166-78754607 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 118, 122 |
| Conread position: | 10-531 |
| Cow position: | chr2:82799514-82800035 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 154 |
| Conread position: | 10-538 |
| Cow position: | chr2:82799682-82800210 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 60 |
| Conread position: | 14-538 |
| Cow position: | chr2:78754908-78755431 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 328 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 150, 155 |
| Conread position: | 26-541 |
| Cow position: | chr2:78754101-78754611 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 305 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 47-568 |
| Cow position: | chr2:82799467-82799988 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 289 |
| Conread position: | 84-568 |
| Cow position: | chr2:78754810-78755294 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 291 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 331, 338 |
| Conread position: | 106-482 |
| Cow position: | chr2:48689542-48689166 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 17 |
| Conread position: | 156-537 |
| Cow position: | chr2:82799408-82799789 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 46, 35 |
| Conread position: | 182-538 |
| Cow position: | chr2:86465174-86465530 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 42 |
| Conread position: | 191-540 |
| Cow position: | chr2:48689540-48689192 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 135, 127 |
| Conread position: | 275-566 |
| Cow position: | chr2:48689540-48689250 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 146, 129 |
Show alignments to all cow chromosomes.