Cow genome map

Conread name: Ss1.1-rthg15_j20.5

Conread position: 1-474
Cow position:
Alignm length: 475
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 422, 404

Conread position: 1-519
Cow position:
Alignm length: 521
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 323

Conread position: 1-567
Cow position:
Alignm length: 571
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 319

Conread position: 2-277
Cow position:
Alignm length: 276
Alignm identity: 181
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 2-448
Cow position:
Alignm length: 450
Alignm identity: 275
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 84, 72

Conread position: 2-541
Cow position:
Alignm length: 546
Alignm identity: 337
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 179, 162

Conread position: 2-557
Cow position:
Alignm length: 562
Alignm identity: 345
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 145, 159

Conread position: 2-568
Cow position:
Alignm length: 571
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 135

Conread position: 2-568
Cow position:
Alignm length: 570
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 132

Conread position: 7-532
Cow position:
Alignm length: 529
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 322

Conread position: 7-541
Cow position:
Alignm length: 542
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 79

Conread position: 8-197
Cow position:
Alignm length: 191
Alignm identity: 133
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 162, 150

Conread position: 8-235
Cow position:
Alignm length: 231
Alignm identity: 160
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 67, 50

Conread position: 8-279
Cow position:
Alignm length: 272
Alignm identity: 186
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 8-280
Cow position:
Alignm length: 273
Alignm identity: 175
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 8-306
Cow position:
Alignm length: 302
Alignm identity: 195
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 79, 72

Conread position: 8-339
Cow position:
Alignm length: 334
Alignm identity: 225
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 142, 152

Conread position: 8-364
Cow position:
Alignm length: 360
Alignm identity: 236
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 79, 66

Conread position: 8-373
Cow position:
Alignm length: 367
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 322

Conread position: 8-417
Cow position:
Alignm length: 411
Alignm identity: 259
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 52, 66

Conread position: 8-474
Cow position:
Alignm length: 468
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 315

Conread position: 8-483
Cow position:
Alignm length: 482
Alignm identity: 303
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 175, 165

Conread position: 8-483
Cow position:
Alignm length: 483
Alignm identity: 303
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 50, 62

Conread position: 8-487
Cow position:
Alignm length: 483
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 153

Conread position: 8-528
Cow position:
Alignm length: 526
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 178

Conread position: 8-538
Cow position:
Alignm length: 533
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 322

Conread position: 8-540
Cow position:
Alignm length: 538
Alignm identity: 332
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 64, 45

Conread position: 8-541
Cow position:
Alignm length: 538
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 79

Conread position: 8-541
Cow position:
Alignm length: 537
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 72

Conread position: 8-541
Cow position:
Alignm length: 535
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 414, 408

Conread position: 8-541
Cow position:
Alignm length: 536
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 247

Conread position: 8-541
Cow position:
Alignm length: 536
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 213

Conread position: 8-541
Cow position:
Alignm length: 535
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 413, 394

Conread position: 8-541
Cow position:
Alignm length: 536
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 156

Conread position: 8-541
Cow position:
Alignm length: 538
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 224

Conread position: 8-541
Cow position:
Alignm length: 536
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 311

Conread position: 8-541
Cow position:
Alignm length: 536
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 156

Conread position: 8-541
Cow position:
Alignm length: 538
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 75

Conread position: 8-541
Cow position:
Alignm length: 540
Alignm identity: 331
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 136, 127

Conread position: 8-545
Cow position:
Alignm length: 540
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 156

Conread position: 8-558
Cow position:
Alignm length: 556
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 223

Conread position: 8-566
Cow position:
Alignm length: 562
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 415, 397

Conread position: 8-566
Cow position:
Alignm length: 560
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 45

Conread position: 8-566
Cow position:
Alignm length: 566
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 59

Conread position: 8-566
Cow position:
Alignm length: 567
Alignm identity: 348
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 54, 87

Conread position: 8-568
Cow position:
Alignm length: 565
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 59

Conread position: 8-568
Cow position:
Alignm length: 566
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 59

Conread position: 8-569
Cow position:
Alignm length: 569
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 59

Conread position: 8-571
Cow position:
Alignm length: 569
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 124

Conread position: 8-580
Cow position:
Alignm length: 576
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 397

Conread position: 9-365
Cow position:
Alignm length: 358
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 217

Conread position: 9-365
Cow position:
Alignm length: 358
Alignm identity: 237
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 227, 221

Conread position: 9-447
Cow position:
Alignm length: 440
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 413, 401

Conread position: 9-447
Cow position:
Alignm length: 443
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 77

Conread position: 9-450
Cow position:
Alignm length: 445
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 231

Conread position: 9-494
Cow position:
Alignm length: 487
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 394, 404

Conread position: 9-498
Cow position:
Alignm length: 490
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 9-534
Cow position:
Alignm length: 531
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 175

Conread position: 9-536
Cow position:
Alignm length: 534
Alignm identity: 328
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 152, 132

Conread position: 9-540
Cow position:
Alignm length: 537
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 217

Conread position: 10-568
Cow position:
Alignm length: 579
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 429

Conread position: 10-579
Cow position:
Alignm length: 572
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 9

Conread position: 11-482
Cow position:
Alignm length: 477
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 150

Conread position: 11-532
Cow position:
Alignm length: 526
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 153

Conread position: 11-541
Cow position:
Alignm length: 532
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 315

Conread position: 11-567
Cow position:
Alignm length: 563
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 62

Conread position: 12-482
Cow position:
Alignm length: 474
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 157

Conread position: 12-492
Cow position:
Alignm length: 484
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 75

Conread position: 12-531
Cow position:
Alignm length: 524
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 75

Conread position: 12-538
Cow position:
Alignm length: 531
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 147

Conread position: 12-541
Cow position:
Alignm length: 530
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-561
Cow position:
Alignm length: 554
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 125

Conread position: 12-569
Cow position:
Alignm length: 561
Alignm identity: 344
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 327, 320

Conread position: 14-398
Cow position:
Alignm length: 391
Alignm identity: 258
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 49, 65

Conread position: 14-534
Cow position:
Alignm length: 526
Alignm identity: 329
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 72, 52

Conread position: 14-535
Cow position:
Alignm length: 525
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 52

Conread position: 14-537
Cow position:
Alignm length: 529
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 43

Conread position: 14-541
Cow position:
Alignm length: 528
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-541
Cow position:
Alignm length: 529
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 407, 402

Conread position: 14-541
Cow position:
Alignm length: 534
Alignm identity: 335
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 152, 169

Conread position: 14-541
Cow position:
Alignm length: 534
Alignm identity: 335
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 69, 78

Conread position: 16-569
Cow position:
Alignm length: 557
Alignm identity: 338
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 155, 148

Conread position: 19-568
Cow position:
Alignm length: 553
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 320

Conread position: 19-568
Cow position:
Alignm length: 553
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 320

Conread position: 20-561
Cow position:
Alignm length: 545
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 298

Conread position: 20-569
Cow position:
Alignm length: 556
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 164

Conread position: 24-460
Cow position:
Alignm length: 442
Alignm identity: 281
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 49, 72

Conread position: 26-538
Cow position:
Alignm length: 514
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 206

Conread position: 28-339
Cow position:
Alignm length: 320
Alignm identity: 211
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 57, 30

Conread position: 28-541
Cow position:
Alignm length: 517
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 203

Conread position: 31-483
Cow position:
Alignm length: 458
Alignm identity: 296
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 117, 122

Conread position: 31-487
Cow position:
Alignm length: 462
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 122

Conread position: 32-541
Cow position:
Alignm length: 514
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 71

Conread position: 78-541
Cow position:
Alignm length: 468
Alignm identity: 284
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 159, 146

Conread position: 85-540
Cow position:
Alignm length: 462
Alignm identity: 291
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 36, 19

Conread position: 85-579
Cow position:
Alignm length: 497
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 231

Conread position: 86-481
Cow position:
Alignm length: 403
Alignm identity: 247
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 169, 163

Conread position: 87-519
Cow position:
Alignm length: 433
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 87-569
Cow position:
Alignm length: 504
Alignm identity: 291
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 219, 340

Conread position: 98-541
Cow position:
Alignm length: 447
Alignm identity: 279
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 207, 217

Conread position: 109-561
Cow position:
Alignm length: 455
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 307

Conread position: 118-537
Cow position:
Alignm length: 422
Alignm identity: 265
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 217, 208

Conread position: 119-571
Cow position:
Alignm length: 457
Alignm identity: 290
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 76, 68

Conread position: 128-343
Cow position:
Alignm length: 217
Alignm identity: 143
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 208, 198

Conread position: 170-568
Cow position:
Alignm length: 406
Alignm identity: 247
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 25, 18

Conread position: 171-537
Cow position:
Alignm length: 371
Alignm identity: 239
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 30, 21

Conread position: 192-568
Cow position:
Alignm length: 379
Alignm identity: 242
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 62, 50

Conread position: 255-541
Cow position:
Alignm length: 291
Alignm identity: 190
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 53, 60

Conread position: 264-541
Cow position:
Alignm length: 280
Alignm identity: 178
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 73, 69

Conread position: 271-541
Cow position:
Alignm length: 271
Alignm identity: 173
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.