Cow genome map
| Conread name: | Ss1.1-rthg15_j20.5 |
| Conread position: | 1-312 |
| Cow position: | chr23:24639783-24640093 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 300, 0 |
| Conread position: | 1-541 |
| Cow position: | chr23:24560827-24560287 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 415, 422 |
| Conread position: | 2-178 |
| Cow position: | chr23:24639952-24640127 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 2-294 |
| Cow position: | chr23:24654097-24654389 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 168, 162 |
| Conread position: | 2-318 |
| Cow position: | chr23:25660383-25660699 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-352 |
| Cow position: | chr23:25724063-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 233 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 63, 70 |
| Conread position: | 2-519 |
| Cow position: | chr23:24535981-24535464 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 230 |
| Conread position: | 7-399 |
| Cow position: | chr23:25698503-25698111 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 163, 157 |
| Conread position: | 7-567 |
| Cow position: | chr23:25626351-25626908 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 233 |
| Conread position: | 7-574 |
| Cow position: | chr23:24522748-24522184 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 143 |
| Conread position: | 8-207 |
| Cow position: | chr23:24546840-24546641 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-281 |
| Cow position: | chr23:25660473-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-352 |
| Cow position: | chr23:25698418-25698074 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 80, 64 |
| Conread position: | 8-364 |
| Cow position: | chr23:24547008-24546652 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 243, 247 |
| Conread position: | 8-371 |
| Cow position: | chr23:24626378-24626741 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 243 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 224, 228 |
| Conread position: | 8-407 |
| Cow position: | chr23:24535807-24535406 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 170, 176 |
| Conread position: | 8-451 |
| Cow position: | chr23:24560568-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 224 |
| Conread position: | 8-451 |
| Cow position: | chr23:25626601-25627044 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 382 |
| Conread position: | 8-523 |
| Cow position: | chr23:24547176-24546661 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 224 |
| Conread position: | 8-532 |
| Cow position: | chr23:25660221-25660745 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 147 |
| Conread position: | 8-534 |
| Cow position: | chr23:24560652-24560126 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 415, 408 |
| Conread position: | 8-536 |
| Cow position: | chr23:24639538-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 472, 465 |
| Conread position: | 8-537 |
| Cow position: | chr23:24547260-24546731 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 64 |
| Conread position: | 8-541 |
| Cow position: | chr23:24639454-24639987 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 240 |
| Conread position: | 8-541 |
| Cow position: | chr23:25626268-25626798 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 66 |
| Conread position: | 8-568 |
| Cow position: | chr23:24639286-24639846 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 79 |
| Conread position: | 9-331 |
| Cow position: | chr23:24522497-24522175 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 223, 230 |
| Conread position: | 9-539 |
| Cow position: | chr23:25626437-25626964 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 84 |
| Conread position: | 10-483 |
| Cow position: | chr23:25698584-25698111 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 296 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 261, 276 |
| Conread position: | 10-541 |
| Cow position: | chr23:24560901-24560371 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 6 |
| Conread position: | 10-566 |
| Cow position: | chr23:25626186-25626739 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 348 |
| Conread position: | 11-458 |
| Cow position: | chr23:25626523-25626969 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 73 |
| Conread position: | 11-541 |
| Cow position: | chr23:24560733-24560203 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 469, 465 |
| Conread position: | 13-537 |
| Cow position: | chr23:24536054-24535530 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-451 |
| Cow position: | chr23:24626302-24626736 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 406, 400 |
| Conread position: | 16-580 |
| Cow position: | chr23:25660145-25660709 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 208 |
| Conread position: | 19-444 |
| Cow position: | chr23:24654029-24654455 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 10, 400 |
| Conread position: | 20-485 |
| Cow position: | chr23:25626028-25626492 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 285, 295 |
| Conread position: | 21-540 |
| Cow position: | chr23:25698657-25698138 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 323 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 314, 303 |
| Conread position: | 22-567 |
| Cow position: | chr23:24547330-24546785 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 210 |
| Conread position: | 23-567 |
| Cow position: | chr23:24522814-24522275 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 27 |
| Conread position: | 26-447 |
| Cow position: | chr23:24535873-24535452 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 32-531 |
| Cow position: | chr23:24639226-24639725 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 166 |
| Conread position: | 72-519 |
| Cow position: | chr23:24626274-24626721 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 48 |
| Conread position: | 76-541 |
| Cow position: | chr23:25698686-25698222 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 88, 96 |
| Conread position: | 91-452 |
| Cow position: | chr23:25724058-25723698 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 224 |
| Conread position: | 92-515 |
| Cow position: | chr23:24654017-24654441 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 93 |
| Conread position: | 106-567 |
| Cow position: | chr23:24560890-24560429 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 75 |
| Conread position: | 115-480 |
| Cow position: | chr23:24639225-24639589 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 189, 214 |
| Conread position: | 128-519 |
| Cow position: | chr23:25724105-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 53 |
| Conread position: | 147-519 |
| Cow position: | chr23:25698699-25698327 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 292, 300 |
| Conread position: | 181-541 |
| Cow position: | chr23:24536054-24535694 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 180, 191 |
| Conread position: | 184-568 |
| Cow position: | chr23:24626302-24626686 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 239, 232 |
| Conread position: | 188-538 |
| Cow position: | chr23:25626028-25626378 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 190-568 |
| Cow position: | chr23:24547330-24546952 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 233, 227 |
| Conread position: | 200-547 |
| Cow position: | chr23:24654043-24654390 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 222, 216 |
| Conread position: | 254-537 |
| Cow position: | chr23:25626010-25626293 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 57 |
| Conread position: | 270-541 |
| Cow position: | chr23:24547334-24547063 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 146, 132 |
| Conread position: | 284-568 |
| Cow position: | chr23:24654043-24654327 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 137, 132 |
| Conread position: | 296-537 |
| Cow position: | chr23:25724105-25723864 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.