Cow genome map

Conread name: Ss1.1-rthg15_j20.5

Conread position: 1-445
Cow position:
Alignm length: 446
Alignm identity: 285
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 169, 41

Conread position: 1-537
Cow position:
Alignm length: 537
Alignm identity: 318
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 316, 0

Conread position: 1-541
Cow position:
Alignm length: 551
Alignm identity: 336
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 19, 88

Conread position: 2-452
Cow position:
Alignm length: 455
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 85

Conread position: 2-481
Cow position:
Alignm length: 483
Alignm identity: 306
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 192, 199

Conread position: 2-519
Cow position:
Alignm length: 522
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 124

Conread position: 2-541
Cow position:
Alignm length: 540
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-558
Cow position:
Alignm length: 560
Alignm identity: 344
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 163, 138

Conread position: 4-390
Cow position:
Alignm length: 402
Alignm identity: 254
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 37, 183

Conread position: 6-483
Cow position:
Alignm length: 482
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 12

Conread position: 7-276
Cow position:
Alignm length: 272
Alignm identity: 184
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 73, 89

Conread position: 7-481
Cow position:
Alignm length: 476
Alignm identity: 295
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 416, 409

Conread position: 8-200
Cow position:
Alignm length: 194
Alignm identity: 135
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 43, 52

Conread position: 8-222
Cow position:
Alignm length: 215
Alignm identity: 140
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 8-281
Cow position:
Alignm length: 276
Alignm identity: 176
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 46, 82

Conread position: 8-352
Cow position:
Alignm length: 347
Alignm identity: 221
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 235, 225

Conread position: 8-363
Cow position:
Alignm length: 357
Alignm identity: 235
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 79, 60

Conread position: 8-363
Cow position:
Alignm length: 357
Alignm identity: 236
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 329, 318

Conread position: 8-395
Cow position:
Alignm length: 391
Alignm identity: 247
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 159, 150

Conread position: 8-399
Cow position:
Alignm length: 392
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-403
Cow position:
Alignm length: 397
Alignm identity: 243
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 388, 379

Conread position: 8-435
Cow position:
Alignm length: 429
Alignm identity: 273
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 77, 55

Conread position: 8-475
Cow position:
Alignm length: 472
Alignm identity: 291
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 301, 12

Conread position: 8-481
Cow position:
Alignm length: 476
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 318

Conread position: 8-493
Cow position:
Alignm length: 489
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 130

Conread position: 8-498
Cow position:
Alignm length: 493
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 240

Conread position: 8-507
Cow position:
Alignm length: 502
Alignm identity: 315
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 374, 18

Conread position: 8-519
Cow position:
Alignm length: 516
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 156

Conread position: 8-532
Cow position:
Alignm length: 537
Alignm identity: 334
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 49, 64

Conread position: 8-540
Cow position:
Alignm length: 535
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 156

Conread position: 8-541
Cow position:
Alignm length: 535
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 414, 402

Conread position: 8-541
Cow position:
Alignm length: 536
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 329, 318

Conread position: 8-559
Cow position:
Alignm length: 555
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 156

Conread position: 8-565
Cow position:
Alignm length: 559
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 72

Conread position: 8-568
Cow position:
Alignm length: 563
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 247

Conread position: 8-568
Cow position:
Alignm length: 563
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 415, 409

Conread position: 9-276
Cow position:
Alignm length: 269
Alignm identity: 188
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 135, 125

Conread position: 9-325
Cow position:
Alignm length: 322
Alignm identity: 207
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 116, 166

Conread position: 9-519
Cow position:
Alignm length: 514
Alignm identity: 314
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 162, 155

Conread position: 9-539
Cow position:
Alignm length: 543
Alignm identity: 337
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 47, 81

Conread position: 9-541
Cow position:
Alignm length: 535
Alignm identity: 324
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 328, 319

Conread position: 9-541
Cow position:
Alignm length: 537
Alignm identity: 324
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 78, 59

Conread position: 10-364
Cow position:
Alignm length: 359
Alignm identity: 223
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 61, 52

Conread position: 10-445
Cow position:
Alignm length: 438
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 154

Conread position: 10-475
Cow position:
Alignm length: 469
Alignm identity: 283
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 355, 70

Conread position: 10-537
Cow position:
Alignm length: 530
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 44

Conread position: 10-569
Cow position:
Alignm length: 563
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 74

Conread position: 11-498
Cow position:
Alignm length: 489
Alignm identity: 281
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 405, 410

Conread position: 11-541
Cow position:
Alignm length: 533
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 221

Conread position: 11-565
Cow position:
Alignm length: 558
Alignm identity: 332
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 324, 315

Conread position: 12-483
Cow position:
Alignm length: 473
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 147

Conread position: 12-502
Cow position:
Alignm length: 493
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 220

Conread position: 12-541
Cow position:
Alignm length: 539
Alignm identity: 326
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 128, 102

Conread position: 13-267
Cow position:
Alignm length: 257
Alignm identity: 172
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 140, 148

Conread position: 13-540
Cow position:
Alignm length: 532
Alignm identity: 319
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 157, 151

Conread position: 13-558
Cow position:
Alignm length: 549
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 211

Conread position: 13-567
Cow position:
Alignm length: 560
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 65

Conread position: 14-437
Cow position:
Alignm length: 425
Alignm identity: 262
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 73, 66

Conread position: 14-479
Cow position:
Alignm length: 468
Alignm identity: 290
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 72, 66

Conread position: 14-498
Cow position:
Alignm length: 488
Alignm identity: 293
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 148, 144

Conread position: 14-501
Cow position:
Alignm length: 492
Alignm identity: 291
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 51, 76

Conread position: 14-519
Cow position:
Alignm length: 512
Alignm identity: 311
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 49, 76

Conread position: 14-538
Cow position:
Alignm length: 527
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 150

Conread position: 14-541
Cow position:
Alignm length: 532
Alignm identity: 314
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 325, 27

Conread position: 14-565
Cow position:
Alignm length: 556
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 73

Conread position: 14-566
Cow position:
Alignm length: 557
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 319

Conread position: 14-569
Cow position:
Alignm length: 566
Alignm identity: 335
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 57, 44

Conread position: 16-396
Cow position:
Alignm length: 383
Alignm identity: 248
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 216, 221

Conread position: 16-481
Cow position:
Alignm length: 469
Alignm identity: 297
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 70, 61

Conread position: 16-519
Cow position:
Alignm length: 505
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 310

Conread position: 18-468
Cow position:
Alignm length: 454
Alignm identity: 291
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 385, 395

Conread position: 18-538
Cow position:
Alignm length: 525
Alignm identity: 325
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 161, 147

Conread position: 19-481
Cow position:
Alignm length: 468
Alignm identity: 283
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 85, 77

Conread position: 20-475
Cow position:
Alignm length: 459
Alignm identity: 289
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 391, 402

Conread position: 20-541
Cow position:
Alignm length: 525
Alignm identity: 321
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 151, 142

Conread position: 21-398
Cow position:
Alignm length: 379
Alignm identity: 230
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 315, 237

Conread position: 21-541
Cow position:
Alignm length: 523
Alignm identity: 332
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 138, 48

Conread position: 22-318
Cow position:
Alignm length: 298
Alignm identity: 192
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 222, 209

Conread position: 22-383
Cow position:
Alignm length: 365
Alignm identity: 219
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 172, 180

Conread position: 22-452
Cow position:
Alignm length: 432
Alignm identity: 260
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 187, 193

Conread position: 22-528
Cow position:
Alignm length: 510
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 394, 399

Conread position: 23-447
Cow position:
Alignm length: 448
Alignm identity: 288
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 58, 63

Conread position: 23-481
Cow position:
Alignm length: 462
Alignm identity: 275
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 87, 78

Conread position: 24-368
Cow position:
Alignm length: 348
Alignm identity: 221
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 231, 223

Conread position: 25-537
Cow position:
Alignm length: 515
Alignm identity: 310
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 228, 224

Conread position: 25-538
Cow position:
Alignm length: 516
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 136

Conread position: 26-471
Cow position:
Alignm length: 451
Alignm identity: 283
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 136, 132

Conread position: 26-519
Cow position:
Alignm length: 499
Alignm identity: 303
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 36, 27

Conread position: 34-482
Cow position:
Alignm length: 456
Alignm identity: 289
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 47, 13

Conread position: 38-399
Cow position:
Alignm length: 366
Alignm identity: 231
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 49, 39

Conread position: 38-538
Cow position:
Alignm length: 509
Alignm identity: 309
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 133, 104

Conread position: 41-517
Cow position:
Alignm length: 480
Alignm identity: 283
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 225, 216

Conread position: 44-533
Cow position:
Alignm length: 492
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 188

Conread position: 44-569
Cow position:
Alignm length: 527
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 180

Conread position: 71-401
Cow position:
Alignm length: 336
Alignm identity: 222
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 108, 94

Conread position: 85-538
Cow position:
Alignm length: 458
Alignm identity: 288
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 86, 64

Conread position: 96-471
Cow position:
Alignm length: 380
Alignm identity: 249
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 158, 22

Conread position: 97-449
Cow position:
Alignm length: 356
Alignm identity: 233
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 14, 74

Conread position: 103-537
Cow position:
Alignm length: 437
Alignm identity: 268
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 233, 228

Conread position: 104-537
Cow position:
Alignm length: 435
Alignm identity: 277
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 64, 55

Conread position: 106-414
Cow position:
Alignm length: 309
Alignm identity: 204
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 106-482
Cow position:
Alignm length: 380
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 17

Conread position: 106-498
Cow position:
Alignm length: 393
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 107-537
Cow position:
Alignm length: 435
Alignm identity: 261
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 49, 30

Conread position: 109-482
Cow position:
Alignm length: 377
Alignm identity: 241
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 11, 23

Conread position: 110-352
Cow position:
Alignm length: 243
Alignm identity: 161
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 110-538
Cow position:
Alignm length: 431
Alignm identity: 258
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 211, 219

Conread position: 118-540
Cow position:
Alignm length: 426
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 298

Conread position: 120-558
Cow position:
Alignm length: 443
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 39

Conread position: 122-402
Cow position:
Alignm length: 284
Alignm identity: 179
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 49, 36

Conread position: 128-498
Cow position:
Alignm length: 375
Alignm identity: 229
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 37, 54

Conread position: 130-540
Cow position:
Alignm length: 413
Alignm identity: 242
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 128, 102

Conread position: 167-535
Cow position:
Alignm length: 371
Alignm identity: 235
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 19, 6

Conread position: 170-541
Cow position:
Alignm length: 374
Alignm identity: 226
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 71, 84

Conread position: 170-541
Cow position:
Alignm length: 374
Alignm identity: 241
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 81, 72

Conread position: 190-484
Cow position:
Alignm length: 297
Alignm identity: 200
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 42, 47

Conread position: 194-436
Cow position:
Alignm length: 243
Alignm identity: 161
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 206-498
Cow position:
Alignm length: 294
Alignm identity: 181
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 133, 115

Conread position: 254-568
Cow position:
Alignm length: 320
Alignm identity: 205
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 123, 173

Conread position: 256-539
Cow position:
Alignm length: 286
Alignm identity: 181
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 20, 8

Conread position: 256-567
Cow position:
Alignm length: 313
Alignm identity: 204
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 166, 155

Conread position: 258-474
Cow position:
Alignm length: 218
Alignm identity: 144
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 164, 158

Conread position: 275-537
Cow position:
Alignm length: 265
Alignm identity: 178
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 146, 135

Conread position: 278-498
Cow position:
Alignm length: 222
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 190, 185

Show alignments to all cow chromosomes.