Cow genome map
| Conread name: | Ss1.1-rthg15_j20.5 |
| Conread position: | 2-541 |
| Cow position: | chr28:7758151-7758674 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 314 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 414, 162 |
| Conread position: | 7-468 |
| Cow position: | chr28:9290236-9290695 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 5, 23 |
| Conread position: | 8-207 |
| Cow position: | chr28:34696401-34696598 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 179, 0 |
| Conread position: | 8-280 |
| Cow position: | chr28:9253340-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-319 |
| Cow position: | chr28:34673592-34673903 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 85, 81 |
| Conread position: | 8-363 |
| Cow position: | chr28:9253256-9253611 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 228, 223 |
| Conread position: | 8-398 |
| Cow position: | chr28:9298803-9299190 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 248 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 91, 15 |
| Conread position: | 8-451 |
| Cow position: | chr28:7758393-7758835 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 403, 385 |
| Conread position: | 8-460 |
| Cow position: | chr28:9299290-9299736 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 319, 288 |
| Conread position: | 8-474 |
| Cow position: | chr28:9298719-9299182 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 295 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 175, 95 |
| Conread position: | 8-481 |
| Cow position: | chr28:11333816-11333349 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 306 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 160, 152 |
| Conread position: | 8-482 |
| Cow position: | chr28:34673424-34673898 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 298 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 45, 67 |
| Conread position: | 8-484 |
| Cow position: | chr28:9290157-9290627 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 301 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 229, 62 |
| Conread position: | 8-519 |
| Cow position: | chr28:7757821-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 162 |
| Conread position: | 8-519 |
| Cow position: | chr28:9253088-9253599 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 408 |
| Conread position: | 8-538 |
| Cow position: | chr28:7757737-7758267 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 325 |
| Conread position: | 8-540 |
| Cow position: | chr28:7758241-7758757 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 308 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 225, 72 |
| Conread position: | 8-541 |
| Cow position: | chr28:7757485-7758018 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 87 |
| Conread position: | 8-541 |
| Cow position: | chr28:7757653-7758186 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 240 |
| Conread position: | 8-541 |
| Cow position: | chr28:7810333-7810857 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 324 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 162, 151 |
| Conread position: | 8-541 |
| Cow position: | chr28:7810417-7810941 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 320 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 8-541 |
| Cow position: | chr28:9290073-9290600 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 324 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 35, 51 |
| Conread position: | 8-546 |
| Cow position: | chr28:9299052-9299576 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 331 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 156, 134 |
| Conread position: | 9-446 |
| Cow position: | chr28:34696150-34696585 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 422, 0 |
| Conread position: | 9-451 |
| Cow position: | chr28:9253173-9253615 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 222 |
| Conread position: | 10-498 |
| Cow position: | chr28:34695815-34696303 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-573 |
| Cow position: | chr28:7757991-7758537 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 308 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 311, 0 |
| Conread position: | 11-366 |
| Cow position: | chr28:33210300-33210656 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 159, 153 |
| Conread position: | 12-498 |
| Cow position: | chr28:34696069-34696555 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 314 |
| Conread position: | 12-537 |
| Cow position: | chr28:34695985-34696510 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 41 |
| Conread position: | 13-567 |
| Cow position: | chr28:34695902-34696456 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 448, 455 |
| Conread position: | 14-490 |
| Cow position: | chr28:7757911-7758387 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 408, 402 |
| Conread position: | 14-532 |
| Cow position: | chr28:9298643-9299156 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 327 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 238, 25 |
| Conread position: | 14-536 |
| Cow position: | chr28:7757575-7758097 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 234 |
| Conread position: | 14-568 |
| Cow position: | chr28:9252925-9253480 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 151 |
| Conread position: | 14-568 |
| Cow position: | chr28:9253010-9253564 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 63 |
| Conread position: | 14-568 |
| Cow position: | chr28:34695735-34696289 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 57 |
| Conread position: | 20-480 |
| Cow position: | chr28:9299218-9299675 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 287 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 49, 63 |
| Conread position: | 20-541 |
| Cow position: | chr28:7757413-7757934 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 66 |
| Conread position: | 21-481 |
| Cow position: | chr28:34673353-34673813 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 39, 32 |
| Conread position: | 22-459 |
| Cow position: | chr28:7758323-7758760 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 253 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 224, 209 |
| Conread position: | 23-450 |
| Cow position: | chr28:33210228-33210656 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 30 |
| Conread position: | 25-541 |
| Cow position: | chr28:7757334-7757850 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 55 |
| Conread position: | 83-558 |
| Cow position: | chr28:7810249-7810706 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 85-460 |
| Cow position: | chr28:7810569-7810944 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 14, 9 |
| Conread position: | 90-541 |
| Cow position: | chr28:11334154-11333703 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 285 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 165, 152 |
| Conread position: | 187-567 |
| Cow position: | chr28:33210223-33210605 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 259 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 5, 160 |
| Conread position: | 255-540 |
| Cow position: | chr28:34695724-34696009 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 68 |
| Conread position: | 342-548 |
| Cow position: | chr28:11334154-11333948 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.