Cow genome map
| Conread name: | Ss1.1-rthg15_j20.5 |
| Conread position: | 1-541 |
| Cow position: | chr3:62742341-62742875 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 338 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 235, 14 |
| Conread position: | 2-538 |
| Cow position: | chr3:62722262-62721726 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 135 |
| Conread position: | 7-493 |
| Cow position: | chr3:68027244-68027730 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 301 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 60, 71 |
| Conread position: | 8-391 |
| Cow position: | chr3:77351005-77350631 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 76, 26 |
| Conread position: | 8-483 |
| Cow position: | chr3:68045838-68046313 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 306 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 79, 64 |
| Conread position: | 8-494 |
| Cow position: | chr3:62722088-62721602 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 151 |
| Conread position: | 8-532 |
| Cow position: | chr3:62742515-62743030 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 327 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 163, 126 |
| Conread position: | 8-541 |
| Cow position: | chr3:68027077-68027610 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 328 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 232, 238 |
| Conread position: | 8-541 |
| Cow position: | chr3:68045670-68046203 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 324 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-567 |
| Cow position: | chr3:68027161-68027720 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 338 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 236, 230 |
| Conread position: | 8-567 |
| Cow position: | chr3:68045754-68046313 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 339 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 236, 231 |
| Conread position: | 8-568 |
| Cow position: | chr3:62722172-62721612 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 224 |
| Conread position: | 9-448 |
| Cow position: | chr3:62722003-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 128 |
| Conread position: | 10-483 |
| Cow position: | chr3:77351169-77350704 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 148, 68 |
| Conread position: | 11-481 |
| Cow position: | chr3:20194794-20195264 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 286 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 60, 39 |
| Conread position: | 14-391 |
| Cow position: | chr3:62743088-62743460 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 319, 29 |
| Conread position: | 21-414 |
| Cow position: | chr3:68027342-68027735 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 65, 47 |
| Conread position: | 22-567 |
| Cow position: | chr3:77351240-77350704 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 319 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 38, 50 |
| Conread position: | 25-541 |
| Cow position: | chr3:62722323-62721807 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 290 |
| Conread position: | 38-498 |
| Cow position: | chr3:20194737-20195197 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 379, 363 |
| Conread position: | 170-541 |
| Cow position: | chr3:62742258-62742628 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 205, 92 |
| Conread position: | 170-568 |
| Cow position: | chr3:62722346-62721948 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 25, 16 |
| Conread position: | 182-568 |
| Cow position: | chr3:68045676-68046062 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 70, 50 |
| Conread position: | 254-568 |
| Cow position: | chr3:62742258-62742571 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 67, 85 |
Show alignments to all cow chromosomes.