Cow genome map
| Conread name: | Ss1.1-rthg15_j20.5 |
| Conread position: | 1-380 |
| Cow position: | chr6:49362485-49362852 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-536 |
| Cow position: | chr6:49428710-49429245 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-566 |
| Cow position: | chr6:49361993-49362546 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 343 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 400, 332 |
| Conread position: | 7-225 |
| Cow position: | chr6:49396781-49396999 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-568 |
| Cow position: | chr6:49396031-49396586 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 8-399 |
| Cow position: | chr6:49341061-49341451 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 343, 337 |
| Conread position: | 8-400 |
| Cow position: | chr6:49429137-49429527 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 368, 0 |
| Conread position: | 8-459 |
| Cow position: | chr6:49396530-49396983 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 223 |
| Conread position: | 8-537 |
| Cow position: | chr6:49340473-49341002 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 307 |
| Conread position: | 8-538 |
| Cow position: | chr6:49340641-49341171 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 45 |
| Conread position: | 8-538 |
| Cow position: | chr6:49340893-49341423 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 414 |
| Conread position: | 8-539 |
| Cow position: | chr6:49340809-49341340 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 45 |
| Conread position: | 8-541 |
| Cow position: | chr6:49340389-49340922 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-541 |
| Cow position: | chr6:49340557-49341090 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-541 |
| Cow position: | chr6:49340725-49341258 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 158 |
| Conread position: | 8-559 |
| Cow position: | chr6:49396362-49396913 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-568 |
| Cow position: | chr6:49396278-49396838 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 460, 456 |
| Conread position: | 10-537 |
| Cow position: | chr6:49395950-49396471 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 0 |
| Conread position: | 10-568 |
| Cow position: | chr6:49396202-49396754 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 543, 28 |
| Conread position: | 11-498 |
| Cow position: | chr6:49428552-49429039 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 45 |
| Conread position: | 11-568 |
| Cow position: | chr6:49395783-49396334 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 110 |
| Conread position: | 12-307 |
| Cow position: | chr6:49396702-49396997 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 240 |
| Conread position: | 12-390 |
| Cow position: | chr6:49396618-49396996 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-483 |
| Cow position: | chr6:49428301-49428772 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 116 |
| Conread position: | 12-484 |
| Cow position: | chr6:49429057-49429527 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 439, 0 |
| Conread position: | 12-520 |
| Cow position: | chr6:49362328-49362824 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 91 |
| Conread position: | 12-545 |
| Cow position: | chr6:49396450-49396983 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 219 |
| Conread position: | 13-570 |
| Cow position: | chr6:49428218-49428775 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 529, 539 |
| Conread position: | 14-304 |
| Cow position: | chr6:49362654-49362948 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 14-446 |
| Cow position: | chr6:49362414-49362834 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 282 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 219, 0 |
| Conread position: | 14-490 |
| Cow position: | chr6:49428807-49429283 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 409 |
| Conread position: | 14-498 |
| Cow position: | chr6:49428975-49429459 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 317 |
| Conread position: | 14-567 |
| Cow position: | chr6:49428639-49429192 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 147 |
| Conread position: | 14-567 |
| Cow position: | chr6:49428891-49429444 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 64 |
| Conread position: | 71-567 |
| Cow position: | chr6:49395678-49396171 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 314 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 195, 68 |
| Conread position: | 86-498 |
| Cow position: | chr6:49361911-49362322 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 315, 18 |
| Conread position: | 95-540 |
| Cow position: | chr6:49362327-49362760 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 92 |
Show alignments to all cow chromosomes.