Cow genome map

Conread name: Ss1.1-rthg15_j20.5

Conread position: 2-399
Cow position: chr7:8277995-8278392 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 240
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 79, 66

Conread position: 2-448
Cow position: chr7:3180432-3180877 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 95

Conread position: 2-474
Cow position: chr7:1439447-1439922 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 297
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 11, 139

Conread position: 2-541
Cow position: chr7:3180180-3180719 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 420, 414

Conread position: 7-289
Cow position: chr7:1015175-1015457 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 182
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 7-567
Cow position: chr7:18390146-18390706 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 60

Conread position: 8-314
Cow position: chr7:11600782-11600476 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 191
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 147, 160

Conread position: 8-396
Cow position: chr7:1015092-1015482 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 246
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 376, 0

Conread position: 8-396
Cow position: chr7:11600866-11600479 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 249
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 73, 79

Conread position: 8-397
Cow position: chr7:18390399-18390788 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 241
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 162, 156

Conread position: 8-401
Cow position: chr7:11434663-11434277 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 253
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 73, 57

Conread position: 8-471
Cow position: chr7:1014756-1015219 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 413, 408

Conread position: 8-474
Cow position: chr7:11600950-11600484 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 300
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 58, 88

Conread position: 8-480
Cow position: chr7:1439793-1440263 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 294
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 87, 69

Conread position: 8-485
Cow position: chr7:8243623-8244097 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 288
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 71, 53

Conread position: 8-495
Cow position: chr7:8243455-8243942 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 304
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 57, 71

Conread position: 8-502
Cow position: chr7:8325642-8326135 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 158

Conread position: 8-532
Cow position: chr7:42878787-42878263 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 57

Conread position: 8-538
Cow position: chr7:1014672-1015202 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 64

Conread position: 8-538
Cow position: chr7:1439622-1440153 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 331
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 69, 18

Conread position: 8-538
Cow position: chr7:3179766-3180296 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 307

Conread position: 8-538
Cow position: chr7:18390063-18390593 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 113

Conread position: 8-540
Cow position: chr7:3180102-3180634 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 64

Conread position: 8-540
Cow position: chr7:3180270-3180800 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 472, 468

Conread position: 8-541
Cow position: chr7:1014840-1015373 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 164

Conread position: 8-541
Cow position: chr7:3179850-3180383 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 313

Conread position: 8-541
Cow position: chr7:8325390-8325923 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 211

Conread position: 8-541
Cow position: chr7:8325474-8326007 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 244

Conread position: 8-541
Cow position: chr7:11601034-11600501 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 331
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 387, 379

Conread position: 8-541
Cow position: chr7:42879123-42878590 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 413, 408

Conread position: 8-542
Cow position: chr7:18390231-18390765 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 78

Conread position: 8-558
Cow position: chr7:11601118-11600568 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 57

Conread position: 8-559
Cow position: chr7:42878955-42878404 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 239

Conread position: 8-567
Cow position: chr7:11601202-11600643 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 83

Conread position: 8-568
Cow position: chr7:8277665-8278225 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 54

Conread position: 8-569
Cow position: chr7:8277413-8277974 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 348
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 213, 244

Conread position: 8-569
Cow position: chr7:8324970-8325531 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 54

Conread position: 8-574
Cow position: chr7:1014426-1014986 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 235

Conread position: 8-574
Cow position: chr7:3179934-3180500 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 472, 468

Conread position: 8-575
Cow position: chr7:8242952-8243518 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 339
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 238, 223

Conread position: 9-452
Cow position: chr7:8278170-8278611 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 270
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 72, 64

Conread position: 9-456
Cow position: chr7:1015009-1015456 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 217

Conread position: 9-541
Cow position: chr7:3180019-3180551 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 306

Conread position: 9-541
Cow position: chr7:8324887-8325419 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 59

Conread position: 9-565
Cow position: chr7:42879206-42878650 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 414, 407

Conread position: 10-519
Cow position: chr7:1014926-1015435 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 154

Conread position: 10-540
Cow position: chr7:1014092-1014622 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 308
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 157, 171

Conread position: 10-541
Cow position: chr7:1014512-1015037 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 53

Conread position: 10-567
Cow position: chr7:8277583-8278140 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 358
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 65, 58

Conread position: 14-480
Cow position: chr7:1439716-1440178 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 289
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 230, 52

Conread position: 14-483
Cow position: chr7:8278091-8278558 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 285
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 144, 137

Conread position: 14-532
Cow position: chr7:8325564-8326082 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 333
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 67, 55

Conread position: 14-538
Cow position: chr7:42878865-42878341 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-538
Cow position: chr7:42879369-42878845 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 51

Conread position: 14-541
Cow position: chr7:8277335-8277862 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 325
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 152, 167

Conread position: 14-541
Cow position: chr7:8277839-8278366 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 327
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 72, 55

Conread position: 14-541
Cow position: chr7:8325228-8325755 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 335
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 83, 53

Conread position: 14-568
Cow position: chr7:8242874-8243427 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 344
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 67, 44

Conread position: 14-569
Cow position: chr7:8325312-8325867 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 139

Conread position: 14-570
Cow position: chr7:8325060-8325616 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 345
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 151, 123

Conread position: 14-576
Cow position: chr7:8243210-8243771 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 342
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 65, 53

Conread position: 15-568
Cow position: chr7:11434824-11434278 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 345
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 232, 216

Conread position: 20-480
Cow position: chr7:8324730-8325189 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 283
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 208, 221

Conread position: 20-541
Cow position: chr7:8277257-8277778 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 336
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 64, 43

Conread position: 20-569
Cow position: chr7:8243300-8243848 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 336
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 141, 80

Conread position: 22-569
Cow position: chr7:8324816-8325363 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 351
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 54, 46

Conread position: 23-567
Cow position: chr7:42879276-42878732 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 400, 393

Conread position: 24-568
Cow position: chr7:18389995-18390539 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 329
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 132, 157

Conread position: 28-539
Cow position: chr7:8242804-8243315 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 306
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 49, 41

Conread position: 32-540
Cow position: chr7:3179706-3180214 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 199

Conread position: 39-568
Cow position: chr7:28846437-28846968 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 317
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 57

Conread position: 57-571
Cow position: chr7:3179646-3180161 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 53

Conread position: 63-475
Cow position: chr7:1014229-1014641 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 252
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 179, 192

Conread position: 74-567
Cow position: chr7:1014654-1015147 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 309
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 74, 79

Conread position: 85-460
Cow position: chr7:1438311-1438686 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 226
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 221, 236

Conread position: 85-541
Cow position: chr7:11601209-11600753 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 280
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 11, 20

Conread position: 103-538
Cow position: chr7:8324729-8325164 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 268
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 56, 47

Conread position: 103-569
Cow position: chr7:8277256-8277722 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 290
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 66, 46

Conread position: 166-474
Cow position: chr7:1439445-1439756 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 201
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 170, 144

Conread position: 187-576
Cow position: chr7:8324729-8325118 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 253
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 61, 45

Show alignments to all cow chromosomes.