Cow genome map

Conread name: Ss1.1-rthg15_j20.5

Conread position: 1-568
Cow position: chr8:45201332-45201899 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 479, 475

Conread position: 2-541
Cow position: chr8:55580969-55581508 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 466, 460

Conread position: 7-391
Cow position: chr8:45201590-45201974 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-236
Cow position: chr8:46817122-46817350 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 147
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 8-306
Cow position: chr8:46817038-46817336 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 192
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 8-311
Cow position: chr8:55581395-55581699 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 195
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 79, 58

Conread position: 8-390
Cow position: chr8:55581311-55581693 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 162, 156

Conread position: 8-442
Cow position: chr8:55581227-55581661 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 143

Conread position: 8-537
Cow position: chr8:46816702-46817231 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 127

Conread position: 8-538
Cow position: chr8:45201171-45201701 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 307

Conread position: 8-538
Cow position: chr8:48407309-48406779 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 247

Conread position: 8-538
Cow position: chr8:48407477-48406947 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-540
Cow position: chr8:45201255-45201787 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 241

Conread position: 8-540
Cow position: chr8:55580891-55581423 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 223

Conread position: 8-541
Cow position: chr8:45201423-45201956 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 240

Conread position: 8-541
Cow position: chr8:46816198-46816731 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 415, 408

Conread position: 8-541
Cow position: chr8:46816618-46817151 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 343

Conread position: 8-541
Cow position: chr8:48406805-48406271 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 66

Conread position: 8-541
Cow position: chr8:55581059-55581592 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 414, 408

Conread position: 8-567
Cow position: chr8:45201087-45201646 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 61

Conread position: 8-568
Cow position: chr8:48407141-48406581 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 224

Conread position: 8-568
Cow position: chr8:48407393-48406833 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 45

Conread position: 9-525
Cow position: chr8:55581144-55581660 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 217

Conread position: 10-538
Cow position: chr8:46816116-46816644 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 314

Conread position: 10-547
Cow position: chr8:46816788-46817325 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 165

Conread position: 10-558
Cow position: chr8:46816452-46817000 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 454, 458

Conread position: 10-566
Cow position: chr8:46816368-46816924 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 62

Conread position: 12-532
Cow position: chr8:48407557-48407037 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-428
Cow position: chr8:46816960-46817374 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 257
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 294, 309

Conread position: 14-539
Cow position: chr8:45201009-45201534 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 466, 462

Conread position: 14-539
Cow position: chr8:46816540-46817065 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 420, 415

Conread position: 14-541
Cow position: chr8:46816036-46816563 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 43

Conread position: 19-541
Cow position: chr8:46815958-46816479 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 404, 7

Conread position: 22-567
Cow position: chr8:48407631-48407086 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 61

Conread position: 25-541
Cow position: chr8:45200936-45201452 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 78

Conread position: 31-562
Cow position: chr8:46815882-46816416 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 331
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 78, 287

Conread position: 86-538
Cow position: chr8:55580885-55581337 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 78

Conread position: 97-537
Cow position: chr8:55580728-55581168 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 273
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 25, 9

Conread position: 114-480
Cow position: chr8:6958074-6957708 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 227
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 14, 59

Conread position: 122-566
Cow position: chr8:45200949-45201393 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 282
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 54, 62

Conread position: 189-569
Cow position: chr8:48407630-48407252 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 234
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 14, 0

Conread position: 190-541
Cow position: chr8:55580736-55581088 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 225
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 9, 41

Conread position: 296-541
Cow position: chr8:6958059-6957814 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 162
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 126, 120

Show alignments to all cow chromosomes.