Cow genome map
| Conread name: | Ss1.1-rthg15_j20.5 |
| Conread position: | 1-291 |
| Cow position: | chrX:25310288-25310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 231, 253 |
| Conread position: | 7-396 |
| Cow position: | chrX:12627673-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 76, 64 |
| Conread position: | 8-290 |
| Cow position: | chrX:29044939-29044657 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 238, 223 |
| Conread position: | 8-315 |
| Cow position: | chrX:29045758-29045450 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 296, 0 |
| Conread position: | 8-363 |
| Cow position: | chrX:25310211-25310566 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 151, 161 |
| Conread position: | 8-537 |
| Cow position: | chrX:25309791-25310320 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 63 |
| Conread position: | 8-537 |
| Cow position: | chrX:25325266-25324737 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 480, 468 |
| Conread position: | 8-538 |
| Cow position: | chrX:25325182-25324652 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 232 |
| Conread position: | 8-541 |
| Cow position: | chrX:25325686-25325153 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 332 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 299, 309 |
| Conread position: | 8-541 |
| Cow position: | chrX:29045191-29044658 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 34 |
| Conread position: | 8-547 |
| Cow position: | chrX:25324762-25324225 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 69 |
| Conread position: | 8-558 |
| Cow position: | chrX:25309707-25310257 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 49 |
| Conread position: | 8-566 |
| Cow position: | chrX:25325098-25324540 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 323 |
| Conread position: | 8-566 |
| Cow position: | chrX:25325434-25324876 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 156 |
| Conread position: | 8-568 |
| Cow position: | chrX:25309959-25310519 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 164 |
| Conread position: | 9-452 |
| Cow position: | chrX:25310128-25310571 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 291 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 71, 54 |
| Conread position: | 9-567 |
| Cow position: | chrX:12627342-12627897 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 329 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 90, 6 |
| Conread position: | 10-538 |
| Cow position: | chrX:25324845-25324316 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 243 |
| Conread position: | 10-566 |
| Cow position: | chrX:25325768-25325212 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 344 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 298, 329 |
| Conread position: | 10-568 |
| Cow position: | chrX:25325516-25324958 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 451, 457 |
| Conread position: | 11-427 |
| Cow position: | chrX:14181318-14180902 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 364, 349 |
| Conread position: | 11-475 |
| Cow position: | chrX:13826708-13826244 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 328, 308 |
| Conread position: | 11-567 |
| Cow position: | chrX:13826876-13826320 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 337 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 160, 153 |
| Conread position: | 12-565 |
| Cow position: | chrX:14181569-14181016 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 331 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 52, 74 |
| Conread position: | 13-498 |
| Cow position: | chrX:13826790-13826305 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 309 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 142, 155 |
| Conread position: | 14-492 |
| Cow position: | chrX:14181483-14181005 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 294 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 55, 64 |
| Conread position: | 14-541 |
| Cow position: | chrX:25325344-25324817 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 318 |
| Conread position: | 14-566 |
| Cow position: | chrX:25325008-25324456 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 315 |
| Conread position: | 14-568 |
| Cow position: | chrX:29045269-29044715 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 118 |
| Conread position: | 14-581 |
| Cow position: | chrX:25324924-25324358 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 127 |
| Conread position: | 15-539 |
| Cow position: | chrX:25325595-25325071 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 57 |
| Conread position: | 20-392 |
| Cow position: | chrX:29045830-29045458 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 45 |
| Conread position: | 38-455 |
| Cow position: | chrX:13826933-13826516 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 256 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 101, 124 |
| Conread position: | 78-547 |
| Cow position: | chrX:25309693-25310162 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 295 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 158, 152 |
| Conread position: | 85-568 |
| Cow position: | chrX:29045282-29044799 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 125 |
| Conread position: | 86-566 |
| Cow position: | chrX:25325776-25325296 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 65, 71 |
| Conread position: | 122-500 |
| Cow position: | chrX:13826933-13826555 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 42, 52 |
| Conread position: | 169-541 |
| Cow position: | chrX:25325777-25325405 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 66, 85 |
| Conread position: | 172-480 |
| Cow position: | chrX:29045762-29045455 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 299, 0 |
| Conread position: | 182-561 |
| Cow position: | chrX:25309713-25310092 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 136, 141 |
| Conread position: | 217-541 |
| Cow position: | chrX:29045318-29044994 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 200, 206 |
| Conread position: | 245-541 |
| Cow position: | chrX:25325785-25325489 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.