Cow genome map
| Conread name: | Ss1.1-rthg21_c18.5 |
| Conread position: | 1-211 |
| Cow position: | chr18:41197806-41198016 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 14, 7 |
| Conread position: | 1-211 |
| Cow position: | chr18:52433297-52433507 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 73, 65 |
| Conread position: | 1-236 |
| Cow position: | chr18:52427948-52428179 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 1-266 |
| Cow position: | chr18:42675090-42674829 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 25, 20 |
| Conread position: | 1-266 |
| Cow position: | chr18:43168107-43168368 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 1-356 |
| Cow position: | chr18:14453225-14452873 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 1-356 |
| Cow position: | chr18:42675258-42674906 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 276, 191 |
| Conread position: | 1-356 |
| Cow position: | chr18:42837621-42837269 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 155, 149 |
| Conread position: | 1-357 |
| Cow position: | chr18:56329536-56329183 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 20 |
| Conread position: | 2-211 |
| Cow position: | chr18:52428453-52428662 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-211 |
| Cow position: | chr18:52447340-52447549 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-211 |
| Cow position: | chr18:52447424-52447633 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-211 |
| Cow position: | chr18:52447592-52447801 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-212 |
| Cow position: | chr18:42675005-42674795 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 72, 66 |
| Conread position: | 2-240 |
| Cow position: | chr18:41949284-41949050 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 190, 0 |
| Conread position: | 2-252 |
| Cow position: | chr18:51789493-51789247 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 149, 157 |
| Conread position: | 2-265 |
| Cow position: | chr18:52447760-52448019 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 190, 0 |
| Conread position: | 2-266 |
| Cow position: | chr18:42744317-42744057 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 19 |
| Conread position: | 2-266 |
| Cow position: | chr18:42744653-42744393 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 73, 65 |
| Conread position: | 2-266 |
| Cow position: | chr18:52448012-52448272 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 244, 190 |
| Conread position: | 2-268 |
| Cow position: | chr18:43022251-43021989 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 2-285 |
| Cow position: | chr18:44398291-44398014 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 151, 157 |
| Conread position: | 2-350 |
| Cow position: | chr18:40075003-40075348 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 27 |
| Conread position: | 2-356 |
| Cow position: | chr18:44154303-44153953 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 265, 204 |
| Conread position: | 2-356 |
| Cow position: | chr18:52447844-52448195 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 244, 190 |
| Conread position: | 2-357 |
| Cow position: | chr18:40075171-40075523 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 7, 13 |
| Conread position: | 2-357 |
| Cow position: | chr18:42837704-42837352 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 156, 148 |
| Conread position: | 2-357 |
| Cow position: | chr18:56329283-56328931 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 266, 204 |
| Conread position: | 3-210 |
| Cow position: | chr18:50246478-50246685 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 3-211 |
| Cow position: | chr18:52428118-52428326 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 63 |
| Conread position: | 3-211 |
| Cow position: | chr18:52428370-52428578 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 71, 63 |
| Conread position: | 3-211 |
| Cow position: | chr18:52433551-52433759 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-211 |
| Cow position: | chr18:52433635-52433843 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-211 |
| Cow position: | chr18:52447089-52447297 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-236 |
| Cow position: | chr18:52428202-52428431 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 3-264 |
| Cow position: | chr18:52433383-52433640 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 157, 151 |
| Conread position: | 3-266 |
| Cow position: | chr18:42985159-42984900 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 62 |
| Conread position: | 3-266 |
| Cow position: | chr18:43119838-43119579 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 189, 0 |
| Conread position: | 3-268 |
| Cow position: | chr18:41197640-41197901 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 245, 202 |
| Conread position: | 3-275 |
| Cow position: | chr18:50848484-50848752 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 3-356 |
| Cow position: | chr18:43174955-43174605 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 155, 148 |
| Conread position: | 3-357 |
| Cow position: | chr18:42837787-42837436 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 276, 202 |
| Conread position: | 4-211 |
| Cow position: | chr18:51839075-51838868 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 147, 154 |
| Conread position: | 4-211 |
| Cow position: | chr18:52447678-52447885 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 199, 188 |
| Conread position: | 4-215 |
| Cow position: | chr18:51752185-51751973 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 64, 84 |
| Conread position: | 4-216 |
| Cow position: | chr18:33064116-33063904 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 83, 78 |
| Conread position: | 4-264 |
| Cow position: | chr18:52428539-52428795 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 4-264 |
| Cow position: | chr18:52433720-52433976 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 4-266 |
| Cow position: | chr18:44253825-44253567 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 188, 0 |
| Conread position: | 4-267 |
| Cow position: | chr18:43093436-43093177 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 245, 205 |
| Conread position: | 4-267 |
| Cow position: | chr18:53526178-53526437 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 209, 0 |
| Conread position: | 4-269 |
| Cow position: | chr18:52448098-52448360 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 184, 197 |
| Conread position: | 4-338 |
| Cow position: | chr18:42744147-42743816 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 259, 196 |
| Conread position: | 4-344 |
| Cow position: | chr18:42827470-42827807 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 283, 188 |
| Conread position: | 4-350 |
| Cow position: | chr18:44398373-44398030 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 244, 188 |
| Conread position: | 4-356 |
| Cow position: | chr18:33064200-33063851 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 273, 188 |
| Conread position: | 4-357 |
| Cow position: | chr18:52012459-52012111 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 22, 5 |
| Conread position: | 13-226 |
| Cow position: | chr18:43048737-43048524 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 61, 54 |
| Conread position: | 13-349 |
| Cow position: | chr18:42792215-42792548 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 222, 187 |
| Conread position: | 13-356 |
| Cow position: | chr18:42744558-42744218 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 13, 8 |
| Conread position: | 13-356 |
| Cow position: | chr18:43093595-43093255 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 13, 8 |
| Conread position: | 13-357 |
| Cow position: | chr18:33064779-33064438 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 147, 154 |
| Conread position: | 13-357 |
| Cow position: | chr18:49032551-49032210 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 264, 196 |
| Conread position: | 14-280 |
| Cow position: | chr18:53586251-53585991 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 54 |
| Conread position: | 16-266 |
| Cow position: | chr18:51400862-51401108 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 176, 0 |
| Conread position: | 24-357 |
| Cow position: | chr18:49033044-49032714 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 244, 168 |
| Conread position: | 25-202 |
| Cow position: | chr18:1418425-1418602 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-204 |
| Cow position: | chr18:43053372-43053193 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-211 |
| Cow position: | chr18:41197746-41197932 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-233 |
| Cow position: | chr18:43092995-43092792 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 176, 0 |
| Conread position: | 25-262 |
| Cow position: | chr18:14453117-14452884 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 183, 0 |
| Conread position: | 25-266 |
| Cow position: | chr18:41198082-41198319 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 25-266 |
| Cow position: | chr18:41949345-41949108 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 25-280 |
| Cow position: | chr18:44398184-44397935 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 25-321 |
| Cow position: | chr18:41198166-41198459 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 252, 184 |
| Conread position: | 25-356 |
| Cow position: | chr18:14453285-14452957 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 243, 180 |
| Conread position: | 25-356 |
| Cow position: | chr18:53635369-53635041 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 252, 167 |
| Conread position: | 25-357 |
| Cow position: | chr18:33064263-33063934 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 213, 175 |
| Conread position: | 25-357 |
| Cow position: | chr18:43175017-43174688 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 259, 167 |
| Conread position: | 27-265 |
| Cow position: | chr18:40324207-40323973 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 229, 165 |
| Conread position: | 27-265 |
| Cow position: | chr18:52446945-52447179 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 28-350 |
| Cow position: | chr18:43093664-43093345 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 259, 179 |
| Conread position: | 30-357 |
| Cow position: | chr18:56493936-56494260 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 173, 162 |
Show alignments to all cow chromosomes.