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Cow genome map

           
Conread name:
           
Ss1.1-rthg23_l8.5
        

               
Conread position:
               
1-102
               

               
Cow position:
               
chr21:28029265-28029366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-156
               

               
Cow position:
               
chr21:32237165-32237318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
83, 35
               

               
Conread position:
               
1-161
               

               
Cow position:
               
chr21:42145785-42145941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1-163
               

               
Cow position:
               
chr21:42348810-42348646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
105, 156
               

               
Conread position:
               
1-166
               

               
Cow position:
               
chr21:11706884-11706714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
83, 121
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr21:14515713-14515886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr21:24887876-24888042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
150, 85
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr21:393889-394064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr21:12640201-12640388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
84, 165
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr21:7132595-7132410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
162, 68
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr21:12617007-12617194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
109, 42
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr21:42170498-42170694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
48, 168
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr21:10882302-10882506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr21:23984416-23984219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
84, 164
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr21:21216273-21216076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
121, 38
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr21:28443510-28443305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
121, 141
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr21:24796170-24795964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
84, 54
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr21:30990401-30990205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr21:28617455-28617669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
84, 46
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr21:47802392-47802181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
68, 32
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr21:12961035-12960819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr21:16909926-16910141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
83, 46
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr21:20925639-20925425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
83, 38
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr21:11114579-11114791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
84, 36
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr21:2785912-2785694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
121, 139
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr21:18494833-18495054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
121, 166
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr21:27743609-27743831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
83, 54
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr21:42913878-42913649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
121, 38
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr21:5344522-5344761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
83, 68
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr21:2679420-2679667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
108, 140
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr21:24222674-24222422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
121, 176
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr21:10118421-10118678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 136
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr21:24130948-24131188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
152, 38
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr21:13489510-13489766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
84, 46
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr21:18845152-18844890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr21:10727148-10727400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
121, 53
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr21:16696236-16696501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
84, 30
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr21:10114461-10114205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
121, 35
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr21:17616457-17616186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
60, 136
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr21:22718913-22718655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
90, 54
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr21:41951430-41951166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
84, 154
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr21:2420372-2420629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
84, 30
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr21:4998619-4998365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
68, 35
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr21:5595527-5595776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 62
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr21:8549545-8549811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
84, 67
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr21:9028488-9028746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
84, 119
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr21:10000948-10001205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
86, 7
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr21:17511644-17511908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
84, 14
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr21:17875328-17875063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
83, 178
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr21:18289530-18289793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
101, 36
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr21:18805890-18805629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
84, 47
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr21:27124259-27123991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
83, 22
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr21:28734044-28733783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
105, 44
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr21:42540353-42540092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
49, 103
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr21:47760643-47760898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
83, 106
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr21:19363596-19363328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
110, 54
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr21:34739714-34739975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
118, 35
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr21:15911268-15911532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
106, 30
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr21:18800661-18800402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
121, 30
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr21:18828442-18828170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
111, 95
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr21:28626106-28626369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
130, 40
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr21:44671621-44671874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr21:45355704-45355965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
121, 44
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr21:10007773-10007506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
88, 21
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr21:32454768-32455037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
6, 20
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr21:33729302-33729563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
83, 41
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr21:40899204-40899472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
83, 107
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr21:41198543-41198266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr21:44962662-44962930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
85, 17
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr21:42384373-42384647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
83, 167
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr21:33562881-33563152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
84, 21
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr21:34391103-34390825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
103, 36
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr21:30607220-30606934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
84, 36
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr21:17637766-17638047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
83, 105
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr21:33263718-33264003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
163, 13
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr21:38120975-38121260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
120, 44
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr21:44826016-44825727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 31
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr21:33210066-33210359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
121, 160
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr21:28190896-28191202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
106, 98
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr21:24642387-24642705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
83, 21
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr21:37345234-37344915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
83, 48
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr21:39401462-39401779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
121, 38
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr21:11359905-11360223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
132, 61
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr21:46264042-46264361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
121, 39
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr21:10633773-10633443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
83, 36
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr21:33350610-33350933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
308, 108
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chr21:39403671-39403327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
89, 53
               

               
Conread position:
               
1-341
               

               
Cow position:
               
chr21:19766722-19767067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
84, 25
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr21:9990380-9990727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 111
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr21:17183789-17184136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
83, 21
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr21:21169627-21169275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
83, 58
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:3361147-3360791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
121, 65
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:7785093-7785445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
83, 104
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:13840190-13840553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
88, 10
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:17643105-17642764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
22, 85
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:20160551-20160904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
114, 27
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:22860869-22861217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
110, 38
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:24858179-24858541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:29069461-29069098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 38
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:30231834-30231471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
88, 150
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:31691346-31691698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 241
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:42096935-42097307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
84, 11
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:42135756-42135394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 301
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:44251958-44251615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
153, 38
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:47465253-47464894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
103, 17
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr21:15545503-15545132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 52
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr21:643201-643590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 38
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr21:5898530-5898140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
130, 52
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr21:12462103-12461695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 25
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr21:6051374-6051776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
134, 54
               

               
Conread position:
               
1-404
               

               
Cow position:
               
chr21:28211064-28211445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
46, 155
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr21:41620987-41621402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
28, 180
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr21:9310913-9311331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
84, 59
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr21:38900642-38901042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
105, 147
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr21:40134024-40134422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
121, 162
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr21:957535-957947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 178
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr21:11027490-11027079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
82, 165
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr21:41590689-41590287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
163, 56
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr21:48234291-48233896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
116, 25
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr21:3763870-3763470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 62
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr21:9301076-9301506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
88, 180
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr21:29978895-29978480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
38, 105
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr21:937906-938303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
291, 30
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr21:23672610-23673028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
66, 95
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr21:19196299-19195876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
84, 165
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr21:38918082-38918488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
83, 36
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr21:15584546-15584136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
121, 35
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr21:37299337-37299747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
163, 30
               

               
Conread position:
               
1-419
               

               
Cow position:
               
chr21:27863652-27863224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
88, 103
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr21:10005018-10004585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
103, 53
               

               
Conread position:
               
2-119
               

               
Cow position:
               
chr21:14125914-14126030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
2-119
               

               
Cow position:
               
chr21:28599640-28599759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
2-172
               

               
Cow position:
               
chr21:45375484-45375661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
30, 88
               

               
Conread position:
               
2-183
               

               
Cow position:
               
chr21:67524-67344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
83, 59
               

               
Conread position:
               
2-188
               

               
Cow position:
               
chr21:43402125-43401936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
83, 176
               

               
Conread position:
               
2-211
               

               
Cow position:
               
chr21:16612498-16612702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
100, 29
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr21:2490921-2490707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr21:3364658-3364872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
83, 152
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr21:4092851-4093065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr21:13632758-13632972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr21:21624283-21624497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr21:36932724-36932938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
83, 167
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr21:38848601-38848387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr21:38945505-38945291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
83, 168
               

               
Conread position:
               
2-217
               

               
Cow position:
               
chr21:33235667-33235884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-226
               

               
Cow position:
               
chr21:29627642-29627870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 175
               

               
Conread position:
               
2-226
               

               
Cow position:
               
chr21:30655838-30656065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-227
               

               
Cow position:
               
chr21:33709301-33709073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
83, 168
               

               
Conread position:
               
2-229
               

               
Cow position:
               
chr21:11143651-11143423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
110, 84
               

               
Conread position:
               
2-229
               

               
Cow position:
               
chr21:34074836-34075066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-230
               

               
Cow position:
               
chr21:44122924-44123155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
83, 159
               

               
Conread position:
               
2-234
               

               
Cow position:
               
chr21:1558495-1558729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
83, 122
               

               
Conread position:
               
2-234
               

               
Cow position:
               
chr21:10075067-10074830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
83, 176
               

               
Conread position:
               
2-234
               

               
Cow position:
               
chr21:40108120-40107885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-236
               

               
Cow position:
               
chr21:27336691-27336928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-242
               

               
Cow position:
               
chr21:4795094-4795334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
120, 41
               

               
Conread position:
               
2-243
               

               
Cow position:
               
chr21:23192649-23192400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr21:2367209-2367454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
109, 29
               

               
Conread position:
               
2-261
               

               
Cow position:
               
chr21:47767514-47767254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 67
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr21:43236832-43237103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 166
               

               
Conread position:
               
2-266
               

               
Cow position:
               
chr21:8235676-8235430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
120, 34
               

               
Conread position:
               
2-289
               

               
Cow position:
               
chr21:20260452-20260164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 23
               

               
Conread position:
               
2-310
               

               
Cow position:
               
chr21:725023-724706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 181
               

               
Conread position:
               
2-347
               

               
Cow position:
               
chr21:23822036-23822368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
104, 29
               

               
Conread position:
               
2-354
               

               
Cow position:
               
chr21:37479825-37480187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 50
               

               
Conread position:
               
2-356
               

               
Cow position:
               
chr21:11645100-11644741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 59
               

               
Conread position:
               
2-356
               

               
Cow position:
               
chr21:29214280-29213930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 41
               

               
Conread position:
               
2-380
               

               
Cow position:
               
chr21:18568781-18568387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
87, 52
               

               
Conread position:
               
2-408
               

               
Cow position:
               
chr21:20262465-20262070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
102, 31
               

               
Conread position:
               
3-229
               

               
Cow position:
               
chr21:42874759-42874534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
82, 148
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chr21:5970969-5970710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
82, 44
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr21:13488389-13488660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 54
               

               
Conread position:
               
4-148
               

               
Cow position:
               
chr21:2525977-2526127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
4-166
               

               
Cow position:
               
chr21:48251159-48250994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
112, 82
               

               
Conread position:
               
4-170
               

               
Cow position:
               
chr21:9212466-9212634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
34, 150
               

               
Conread position:
               
4-177
               

               
Cow position:
               
chr21:17428369-17428541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
4-177
               

               
Cow position:
               
chr21:22353364-22353192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
4-178
               

               
Cow position:
               
chr21:2495303-2495127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
81, 150
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr21:19170040-19169861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
81, 125
               

               
Conread position:
               
4-183
               

               
Cow position:
               
chr21:43271983-43271802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
81, 125
               

               
Conread position:
               
4-185
               

               
Cow position:
               
chr21:4267479-4267294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
81, 174
               

               
Conread position:
               
4-185
               

               
Cow position:
               
chr21:27607492-27607307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
85, 129
               

               
Conread position:
               
4-185
               

               
Cow position:
               
chr21:42558964-42559149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
81, 174
               

               
Conread position:
               
4-191
               

               
Cow position:
               
chr21:5636850-5636660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
118, 30
               

               
Conread position:
               
4-197
               

               
Cow position:
               
chr21:23311077-23310889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
91, 109
               

               
Conread position:
               
4-201
               

               
Cow position:
               
chr21:21223160-21223353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr21:21480312-21480114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
137, 82
               

               
Conread position:
               
4-212
               

               
Cow position:
               
chr21:6102389-6102183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
100, 60
               

               
Conread position:
               
4-212
               

               
Cow position:
               
chr21:28989483-28989688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
171, 35
               

               
Conread position:
               
4-212
               

               
Cow position:
               
chr21:32666436-32666225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 125
               

               
Conread position:
               
4-213
               

               
Cow position:
               
chr21:4585495-4585279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
4-228
               

               
Cow position:
               
chr21:45866802-45867028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
84, 44
               

               
Conread position:
               
4-230
               

               
Cow position:
               
chr21:36896168-36895939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
81, 172
               

               
Conread position:
               
4-245
               

               
Cow position:
               
chr21:44733291-44733062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
177, 81
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr21:13409952-13409716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
4-260
               

               
Cow position:
               
chr21:17856414-17856670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 82
               

               
Conread position:
               
4-260
               

               
Cow position:
               
chr21:25536864-25537124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
80, 179
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr21:33592-33849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
84, 32
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr21:6910013-6909748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
81, 164
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr21:13035176-13034908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
80, 114
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr21:18601743-18602008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
85, 153
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr21:19402455-19402191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 110
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr21:19412148-19411885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
81, 125
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr21:23586747-23587012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr21:24136788-24137051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
81, 151
               

               
Conread position:
               
4-266
               

               
Cow position:
               
chr21:43357393-43357124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
84, 37
               

               
Conread position:
               
4-267
               

               
Cow position:
               
chr21:28477492-28477762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
81, 65
               

               
Conread position:
               
4-270
               

               
Cow position:
               
chr21:18941962-18941697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
107, 10
               

               
Conread position:
               
4-273
               

               
Cow position:
               
chr21:20329213-20329486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
81, 70
               

               
Conread position:
               
4-284
               

               
Cow position:
               
chr21:11137779-11137496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
81, 93
               

               
Conread position:
               
4-285
               

               
Cow position:
               
chr21:10040810-10040526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
81, 126
               

               
Conread position:
               
4-288
               

               
Cow position:
               
chr21:16187935-16187653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
117, 51
               

               
Conread position:
               
4-293
               

               
Cow position:
               
chr21:12723027-12723310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
102, 141
               

               
Conread position:
               
4-322
               

               
Cow position:
               
chr21:12801876-12801555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 41
               

               
Conread position:
               
4-327
               

               
Cow position:
               
chr21:5392672-5392340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 73
               

               
Conread position:
               
4-327
               

               
Cow position:
               
chr21:7582039-7581708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
118, 180
               

               
Conread position:
               
4-327
               

               
Cow position:
               
chr21:29484854-29485175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 41
               

               
Conread position:
               
4-328
               

               
Cow position:
               
chr21:3585488-3585175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
117, 18
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr21:81941-82278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
53, 166
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr21:34151451-34151798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
86, 34
               

               
Conread position:
               
4-355
               

               
Cow position:
               
chr21:19615042-19615397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
81, 10
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr21:9416113-9416475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
80, 168
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr21:24598532-24598871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
129, 27
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr21:40786541-40786905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
80, 178
               

               
Conread position:
               
4-409
               

               
Cow position:
               
chr21:41155731-41156150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
118, 33
               

               
Conread position:
               
4-410
               

               
Cow position:
               
chr21:19083730-19083305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
25, 288
               

               
Conread position:
               
4-415
               

               
Cow position:
               
chr21:32297640-32297220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
118, 163
               

               
Conread position:
               
4-417
               

               
Cow position:
               
chr21:40589612-40589191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
177, 82
               

               
Conread position:
               
4-419
               

               
Cow position:
               
chr21:21652339-21652769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 128
               

               
Conread position:
               
4-420
               

               
Cow position:
               
chr21:22856085-22856511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
80, 176
               

               
Conread position:
               
4-430
               

               
Cow position:
               
chr21:29002291-29001844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 397
               

               
Conread position:
               
4-443
               

               
Cow position:
               
chr21:41974508-41974055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
118, 176
               

               
Conread position:
               
5-167
               

               
Cow position:
               
chr21:4080224-4080391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
79, 155
               

               
Conread position:
               
5-211
               

               
Cow position:
               
chr21:35569505-35569307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
117, 42
               

               
Conread position:
               
5-212
               

               
Cow position:
               
chr21:39450297-39450083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
5-239
               

               
Cow position:
               
chr21:32535848-32536082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
78, 26
               

               
Conread position:
               
5-255
               

               
Cow position:
               
chr21:36163091-36162838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
84, 34
               

               
Conread position:
               
5-262
               

               
Cow position:
               
chr21:20192774-20193022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
111, 26
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr21:12301632-12301379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
150, 51
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr21:28442616-28442864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
113, 40
               

               
Conread position:
               
5-273
               

               
Cow position:
               
chr21:18554937-18554671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
80, 26
               

               
Conread position:
               
5-283
               

               
Cow position:
               
chr21:1058948-1059224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
85, 48
               

               
Conread position:
               
5-327
               

               
Cow position:
               
chr21:23322212-23321885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
78, 176
               

               
Conread position:
               
5-349
               

               
Cow position:
               
chr21:41579619-41579973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
79, 345
               

               
Conread position:
               
5-356
               

               
Cow position:
               
chr21:11740259-11739894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
39, 120
               

               
Conread position:
               
5-356
               

               
Cow position:
               
chr21:30592432-30592089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
129, 29
               

               
Conread position:
               
5-365
               

               
Cow position:
               
chr21:19258698-19259050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
79, 38
               

               
Conread position:
               
5-407
               

               
Cow position:
               
chr21:42500904-42501327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
56, 287
               

               
Conread position:
               
5-410
               

               
Cow position:
               
chr21:33982937-33982535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 81
               

               
Conread position:
               
5-412
               

               
Cow position:
               
chr21:9477030-9477448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
80, 167
               

               
Conread position:
               
5-413
               

               
Cow position:
               
chr21:6833924-6834331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
83, 29
               

               
Conread position:
               
6-117
               

               
Cow position:
               
chr21:43631330-43631219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-163
               

               
Cow position:
               
chr21:37886283-37886440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
98, 109
               

               
Conread position:
               
6-188
               

               
Cow position:
               
chr21:16817004-16817191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
79, 55
               

               
Conread position:
               
6-212
               

               
Cow position:
               
chr21:26648134-26647930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
63, 21
               

               
Conread position:
               
6-265
               

               
Cow position:
               
chr21:31662333-31662598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
100, 134
               

               
Conread position:
               
6-283
               

               
Cow position:
               
chr21:18842365-18842088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
116, 90
               

               
Conread position:
               
6-283
               

               
Cow position:
               
chr21:45330735-45330458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
78, 170
               

               
Conread position:
               
6-328
               

               
Cow position:
               
chr21:13128221-13127907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
115, 28
               

               
Conread position:
               
6-381
               

               
Cow position:
               
chr21:20152820-20153208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
81, 43
               

               
Conread position:
               
6-397
               

               
Cow position:
               
chr21:38449579-38449183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
60, 53
               

               
Conread position:
               
6-404
               

               
Cow position:
               
chr21:27229922-27229530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
58, 33
               

               
Conread position:
               
6-407
               

               
Cow position:
               
chr21:46911-47327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
98, 51
               

               
Conread position:
               
6-407
               

               
Cow position:
               
chr21:47861067-47861456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
78, 32
               

               
Conread position:
               
6-411
               

               
Cow position:
               
chr21:25764507-25764896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
164, 138
               

               
Conread position:
               
6-420
               

               
Cow position:
               
chr21:44114257-44113838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 6
               

               
Conread position:
               
7-178
               

               
Cow position:
               
chr21:27810278-27810454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
7-225
               

               
Cow position:
               
chr21:6764830-6764609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
77, 101
               

               
Conread position:
               
7-249
               

               
Cow position:
               
chr21:24607259-24607501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
56, 117
               

               
Conread position:
               
7-259
               

               
Cow position:
               
chr21:11131453-11131707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
78, 147
               

               
Conread position:
               
7-264
               

               
Cow position:
               
chr21:15493977-15494230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
8-213
               

               
Cow position:
               
chr21:21077197-21077405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
114, 146
               

               
Conread position:
               
8-328
               

               
Cow position:
               
chr21:27569286-27568987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
152, 29
               

               
Conread position:
               
8-356
               

               
Cow position:
               
chr21:641457-641809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 58
               

               
Conread position:
               
8-366
               

               
Cow position:
               
chr21:14452111-14452474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
123, 33
               

               
Conread position:
               
8-412
               

               
Cow position:
               
chr21:34663498-34663901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
209, 12
               

               
Conread position:
               
14-203
               

               
Cow position:
               
chr21:13519071-13519259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
71, 124
               

               
Conread position:
               
14-204
               

               
Cow position:
               
chr21:912086-911896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
106, 25
               

               
Conread position:
               
14-262
               

               
Cow position:
               
chr21:15976515-15976761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
70, 27
               

               
Conread position:
               
14-328
               

               
Cow position:
               
chr21:42841712-42841405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
81, 25
               

               
Conread position:
               
14-407
               

               
Cow position:
               
chr21:30222222-30222619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
98, 43
               

               
Conread position:
               
14-415
               

               
Cow position:
               
chr21:18155693-18155278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
75, 161
               

               
Conread position:
               
15-269
               

               
Cow position:
               
chr21:18414932-18415187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
15-408
               

               
Cow position:
               
chr21:23980305-23979899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
16, 147
               

               
Conread position:
               
16-236
               

               
Cow position:
               
chr21:11639901-11640123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
89, 150
               

               
Conread position:
               
16-299
               

               
Cow position:
               
chr21:20418806-20418517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
16-321
               

               
Cow position:
               
chr21:36297368-36297685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
16-329
               

               
Cow position:
               
chr21:40168752-40168427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
8, 241
               

               
Conread position:
               
18-158
               

               
Cow position:
               
chr21:24094871-24094723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
18-264
               

               
Cow position:
               
chr21:25629027-25628780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
65, 51
               

               
Conread position:
               
19-212
               

               
Cow position:
               
chr21:44754891-44754700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
150, 67
               

               
Conread position:
               
19-263
               

               
Cow position:
               
chr21:36789679-36789924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
87, 67
               

               
Conread position:
               
21-262
               

               
Cow position:
               
chr21:19759631-19759879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
64, 107
               

               
Conread position:
               
24-211
               

               
Cow position:
               
chr21:29942893-29943081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
89, 62
               

               
Conread position:
               
24-328
               

               
Cow position:
               
chr21:35437577-35437295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
6, 14
               

               
Conread position:
               
24-356
               

               
Cow position:
               
chr21:12916539-12916193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
61, 157
               

               
Conread position:
               
24-399
               

               
Cow position:
               
chr21:32559468-32559103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 45
               

               
Conread position:
               
25-418
               

               
Cow position:
               
chr21:10071046-10070635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
60, 148
               

               
Conread position:
               
26-253
               

               
Cow position:
               
chr21:23150132-23149902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
80, 168
               

               
Conread position:
               
26-266
               

               
Cow position:
               
chr21:32339849-32339608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
68, 142
               

               
Conread position:
               
26-266
               

               
Cow position:
               
chr21:35354422-35354663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
85, 143
               

               
Conread position:
               
26-347
               

               
Cow position:
               
chr21:30849052-30848732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
96, 14
               

               
Conread position:
               
26-361
               

               
Cow position:
               
chr21:802406-802094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
283, 84
               

               
Conread position:
               
26-363
               

               
Cow position:
               
chr21:13089580-13089233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
76, 277
               

               
Conread position:
               
27-235
               

               
Cow position:
               
chr21:9360335-9360536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
27-293
               

               
Cow position:
               
chr21:30250301-30250045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
7, 85
               

               
Conread position:
               
27-328
               

               
Cow position:
               
chr21:27624599-27624899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
96, 130
               

               
Conread position:
               
27-356
               

               
Cow position:
               
chr21:23535603-23535937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
55, 118
               

               
Conread position:
               
28-271
               

               
Cow position:
               
chr21:10601483-10601238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
131, 83
               

               
Conread position:
               
29-231
               

               
Cow position:
               
chr21:18041956-18041750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
93, 151
               

               
Conread position:
               
29-233
               

               
Cow position:
               
chr21:13754685-13754885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
88, 71
               

               
Conread position:
               
29-266
               

               
Cow position:
               
chr21:395762-395999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
93, 142
               

               
Conread position:
               
29-269
               

               
Cow position:
               
chr21:33997335-33997092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
8, 50
               

               
Conread position:
               
29-405
               

               
Cow position:
               
chr21:34010504-34010118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
92, 57
               

               
Conread position:
               
29-411
               

               
Cow position:
               
chr21:34653968-34654350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 65
               

               
Conread position:
               
30-204
               

               
Cow position:
               
chr21:9980071-9979900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
76, 53
               

               
Conread position:
               
30-277
               

               
Cow position:
               
chr21:4399692-4399946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
54, 13
               

               
Conread position:
               
30-348
               

               
Cow position:
               
chr21:10263928-10264252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
7, 26
               

               
Conread position:
               
31-182
               

               
Cow position:
               
chr21:41957282-41957127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
91, 149
               

               
Conread position:
               
31-264
               

               
Cow position:
               
chr21:16914669-16914908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
54, 117
               

               
Conread position:
               
35-316
               

               
Cow position:
               
chr21:22465095-22465376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
74, 106
               

               
Conread position:
               
35-409
               

               
Cow position:
               
chr21:8206670-8207036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
71, 57
               

               
Conread position:
               
36-212
               

               
Cow position:
               
chr21:18850327-18850148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
65, 33
               

               
Conread position:
               
36-398
               

               
Cow position:
               
chr21:7673024-7673383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
7, 77
               

               
Conread position:
               
38-212
               

               
Cow position:
               
chr21:13898085-13898266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
38-242
               

               
Cow position:
               
chr21:2904572-2904370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
100, 70
               

               
Conread position:
               
39-265
               

               
Cow position:
               
chr21:26244825-26245045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
83, 17
               

               
Conread position:
               
39-268
               

               
Cow position:
               
chr21:3818109-3818343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
48, 132
               

               
Conread position:
               
39-268
               

               
Cow position:
               
chr21:47066995-47066767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
77, 102
               

               
Conread position:
               
39-290
               

               
Cow position:
               
chr21:45262910-45262654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
78, 98
               

               
Conread position:
               
39-356
               

               
Cow position:
               
chr21:10561682-10561360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
83, 122
               

               
Conread position:
               
40-267
               

               
Cow position:
               
chr21:17008884-17009114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
49, 66
               

               
Conread position:
               
41-283
               

               
Cow position:
               
chr21:36795505-36795752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
81, 11
               

               
Conread position:
               
43-427
               

               
Cow position:
               
chr21:17560023-17559618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
63, 124
               

               
Conread position:
               
44-429
               

               
Cow position:
               
chr21:45906714-45906318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
67, 133
               

               
Conread position:
               
45-262
               

               
Cow position:
               
chr21:44515172-44515392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
55, 13
               

               
Conread position:
               
45-306
               

               
Cow position:
               
chr21:13365246-13365513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
77, 139
               

               
Conread position:
               
45-356
               

               
Cow position:
               
chr21:30835270-30835591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 177
               

               
Conread position:
               
46-264
               

               
Cow position:
               
chr21:31090511-31090306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
85, 62
               

               
Conread position:
               
61-401
               

               
Cow position:
               
chr21:16569825-16570168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
61, 123
               

               
Conread position:
               
61-405
               

               
Cow position:
               
chr21:44214048-44214386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
60, 180
               

               
Conread position:
               
62-323
               

               
Cow position:
               
chr21:4280747-4280482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
61, 117
               

               
Conread position:
               
63-414
               

               
Cow position:
               
chr21:47719373-47719018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
113, 48
               

               
Conread position:
               
65-356
               

               
Cow position:
               
chr21:8349256-8349550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 188
               

               
Conread position:
               
75-356
               

               
Cow position:
               
chr21:8426379-8426667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
37, 106
               

               
Conread position:
               
78-265
               

               
Cow position:
               
chr21:297694-297885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
81-356
               

               
Cow position:
               
chr21:829258-828985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
89, 30
               

               
Conread position:
               
82-327
               

               
Cow position:
               
chr21:29014610-29014363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
89, 36
               

               
Conread position:
               
92-446
               

               
Cow position:
               
chr21:22014142-22014509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
30, 57
               

               
Conread position:
               
94-418
               

               
Cow position:
               
chr21:742245-742561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 74
               

               
Conread position:
               
97-410
               

               
Cow position:
               
chr21:45835442-45835110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 86
               

               
Conread position:
               
114-366
               

               
Cow position:
               
chr21:28030269-28030520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
50, 62
               

               
Conread position:
               
115-265
               

               
Cow position:
               
chr21:47160199-47160349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
66, 29
               

               
Conread position:
               
133-293
               

               
Cow position:
               
chr21:20183071-20183230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
50, 32
               

               
Conread position:
               
133-356
               

               
Cow position:
               
chr21:46599359-46599583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 138
               

               
Conread position:
               
133-366
               

               
Cow position:
               
chr21:19240877-19240637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
133-406
               

               
Cow position:
               
chr21:71585-71861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
49, 143
               

               
Conread position:
               
136-349
               

               
Cow position:
               
chr21:12104367-12104576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
32, 40
               

               
Conread position:
               
144-413
               

               
Cow position:
               
chr21:36682332-36682608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
12, 215
               

               
Conread position:
               
171-410
               

               
Cow position:
               
chr21:39393784-39394030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
11, 152
               
Show alignments to all cow chromosomes.