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Cow genome map

           
Conread name:
           
Ss1.1-rthg23_l8.5
        

               
Conread position:
               
1-120
               

               
Cow position:
               
chr3:24639368-24639489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
1-120
               

               
Cow position:
               
chr3:51609597-51609717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
1-120
               

               
Cow position:
               
chr3:55971006-55971122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-120
               

               
Cow position:
               
chr3:79905143-79905022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-137
               

               
Cow position:
               
chr3:4861470-4861604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
119, 40
               

               
Conread position:
               
1-137
               

               
Cow position:
               
chr3:61467386-61467524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
1-150
               

               
Cow position:
               
chr3:58383749-58383896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
121, 30
               

               
Conread position:
               
1-151
               

               
Cow position:
               
chr3:29334733-29334580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
82, 37
               

               
Conread position:
               
1-157
               

               
Cow position:
               
chr3:16547457-16547613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
87, 39
               

               
Conread position:
               
1-157
               

               
Cow position:
               
chr3:83920979-83921134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
82, 112
               

               
Conread position:
               
1-163
               

               
Cow position:
               
chr3:5045029-5044860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-163
               

               
Cow position:
               
chr3:15080958-15080803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
1-163
               

               
Cow position:
               
chr3:31419482-31419645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 38
               

               
Conread position:
               
1-163
               

               
Cow position:
               
chr3:55117191-55117023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
84, 159
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr3:79592108-79591937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-166
               

               
Cow position:
               
chr3:4031749-4031916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
121, 42
               

               
Conread position:
               
1-169
               

               
Cow position:
               
chr3:25691530-25691704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
87, 61
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr3:6443015-6443191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
6, 129
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr3:11333537-11333360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
58, 106
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr3:56697719-56697896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
5, 129
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr3:5887815-5888002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr3:79208222-79208036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chr3:42588130-42588329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
83, 53
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr3:13118126-13118314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
83, 105
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr3:7408264-7408463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
84, 166
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr3:11019899-11020093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
84, 14
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr3:34525864-34525664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
83, 154
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr3:49455016-49455213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
84, 45
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr3:49230791-49231000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
62, 172
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr3:49787187-49787396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
83, 144
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr3:67161712-67161926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
23, 186
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr3:364438-364223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
83, 159
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr3:54959971-54960179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
83, 31
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr3:78201048-78201257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
120, 155
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr3:4332144-4332355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
84, 146
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr3:15859890-15859676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
105, 164
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr3:17451153-17450949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
180, 98
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr3:29807243-29807457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
120, 57
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr3:42483681-42483898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
89, 38
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr3:48923732-48923531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr3:15752847-15752640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
154, 21
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr3:22661060-22661275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
84, 154
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr3:30417910-30418129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
84, 53
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr3:41367203-41366986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
115, 40
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr3:63861120-63860895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
82, 139
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr3:84000393-84000616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
87, 44
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr3:74621216-74620982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
85, 74
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr3:49119250-49119012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
84, 167
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr3:81277922-81277673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
121, 178
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr3:55947356-55947610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
83, 180
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr3:33698502-33698762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
83, 188
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr3:83816012-83815753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
103, 76
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr3:79112599-79112343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 151
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr3:18459739-18459488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
91, 35
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr3:36100609-36100878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
82, 197
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr3:2680292-2680555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
30, 168
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr3:20262449-20262186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
84, 42
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr3:22089501-22089235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
84, 10
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr3:23471687-23471417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
82, 114
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr3:25690566-25690835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
83, 152
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr3:35852687-35852429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
171, 74
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr3:43571521-43571790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
84, 30
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr3:49678903-49679174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
84, 43
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr3:50762905-50763163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
54, 64
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr3:54903349-54903606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
83, 180
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr3:56301567-56301316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
105, 150
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr3:59366328-59366595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
43, 163
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr3:74119665-74119387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
83, 168
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr3:46350440-46350714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
92, 226
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr3:71430431-71430161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
88, 186
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr3:14633206-14632939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
105, 28
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr3:20437865-20437612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
111, 25
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr3:38346982-38347234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
83, 53
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr3:59621856-59621604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
115, 8
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr3:66292398-66292132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
64, 48
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr3:73759739-73759473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
120, 173
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr3:78946056-78945798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
100, 203
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr3:2216140-2216413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr3:4457295-4457026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
83, 105
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr3:10347136-10347396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
108, 40
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr3:18184849-18185120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
83, 37
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr3:37599635-37599383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
118, 26
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr3:49650160-49650433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
29, 162
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr3:53112950-53113220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
121, 166
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr3:63507483-63507215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
146, 62
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr3:67929487-67929215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
83, 161
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr3:53572969-53572706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
88, 38
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr3:5100980-5100723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
121, 38
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr3:53592920-53592639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr3:38691625-38691355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
70, 35
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr3:59473893-59474179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
48, 183
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr3:5096985-5097268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
83, 37
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr3:15685136-15684861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
155, 40
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr3:19006448-19006718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
199, 46
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr3:67544093-67543807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
20, 170
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr3:26960814-26960525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
87, 179
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr3:49382733-49383012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
86, 44
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr3:23445109-23444808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
83, 30
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr3:11711733-11712046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
54, 298
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr3:57764004-57764300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
103, 160
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr3:70401683-70401977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
121, 40
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr3:27289718-27290021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
83, 43
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr3:79292615-79292919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
83, 35
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr3:5374114-5374418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
121, 55
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr3:72675868-72676181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
43, 161
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr3:45534519-45534193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
105, 234
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr3:3738265-3738582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
121, 98
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr3:73443306-73442995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
103, 44
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr3:12712142-12711805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
92, 167
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr3:13507244-13507574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 59
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr3:17447827-17447511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
135, 39
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr3:58540752-58540418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
83, 198
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr3:70899681-70900000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
103, 43
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chr3:31309574-31309224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
82, 36
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr3:70895827-70896167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 161
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr3:73708829-73709175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
92, 38
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr3:26970606-26970944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
103, 30
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr3:28898442-28898086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
84, 36
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr3:43233284-43233638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
84, 152
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr3:59000965-59000627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
98, 36
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:10958449-10958104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
5, 31
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:14552659-14553009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
121, 38
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:14601933-14601566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
88, 11
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:15158822-15159171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
137, 40
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:16333587-16333941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
83, 35
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:17222363-17221996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
120, 11
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:17695224-17694865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
83, 56
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:39970091-39969726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:45647457-45647802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 286
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:45881690-45882036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
294, 40
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:48852187-48851830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
83, 123
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:52607964-52608318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 121
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:54434754-54435105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
121, 44
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:56582624-56582985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
84, 30
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:57577475-57577833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
85, 65
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:63315912-63316264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
84, 152
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:68708227-68707885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 167
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:71161575-71161927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
84, 45
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:72390861-72391225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
84, 54
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:74233976-74234322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 19
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr3:53790760-53790399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 192
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr3:20675099-20674735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
43, 167
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr3:53150108-53150474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
121, 31
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr3:67704321-67704681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
120, 48
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr3:55124497-55124133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
154, 38
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr3:16656700-16656334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
238, 111
               

               
Conread position:
               
1-380
               

               
Cow position:
               
chr3:82020064-82019680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
5, 167
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr3:2036079-2036471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
84, 41
               

               
Conread position:
               
1-391
               

               
Cow position:
               
chr3:69417007-69416605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
84, 166
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr3:6689775-6690176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
80, 162
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr3:18393603-18393226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
137, 31
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr3:2506700-2506296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
82, 167
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr3:48362862-48363247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 74
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr3:2393185-2392788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
82, 53
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr3:3985111-3985500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
121, 40
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr3:65968935-65969359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-404
               

               
Cow position:
               
chr3:15387992-15388408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
84, 146
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr3:7763445-7763845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
84, 46
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr3:68881335-68880945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 167
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr3:17456488-17456080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
84, 157
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr3:53909894-53910299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
87, 12
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr3:26065782-26066177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 56
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr3:67744846-67744451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr3:29813024-29813418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
121, 55
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr3:23169289-23168876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 210
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr3:70676001-70676422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
84, 60
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr3:27274314-27274720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 40
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr3:30179864-30180275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
85, 35
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr3:59333548-59333952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
37, 49
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr3:65058481-65058892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
84, 36
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr3:80564741-80565164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 19
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr3:29887643-29887246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 22
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr3:2518756-2518341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
84, 169
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr3:71237937-71238346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
121, 38
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr3:4461708-4461294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
121, 38
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr3:30009129-30008708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
83, 47
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr3:36570269-36569841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
30, 47
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr3:26903896-26904300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
88, 44
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr3:9663406-9662970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr3:15954296-15953882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
87, 47
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr3:52652293-52651880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
192, 38
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr3:66885257-66884832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
159, 110
               

               
Conread position:
               
1-419
               

               
Cow position:
               
chr3:59392329-59391923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
83, 105
               

               
Conread position:
               
1-419
               

               
Cow position:
               
chr3:71497364-71496926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
82, 58
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr3:2397002-2396589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 138
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr3:39661669-39661251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
88, 25
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr3:72168940-72168534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
84, 60
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr3:60933196-60933627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 45
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr3:31225230-31225633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
180, 82
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr3:55970285-55970726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
83, 53
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr3:78443782-78443355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
84, 158
               

               
Conread position:
               
2-107
               

               
Cow position:
               
chr3:45221918-45221818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
2-119
               

               
Cow position:
               
chr3:18607151-18607267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
2-165
               

               
Cow position:
               
chr3:34316182-34316013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
2-183
               

               
Cow position:
               
chr3:69345040-69344857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 131
               

               
Conread position:
               
2-207
               

               
Cow position:
               
chr3:77496599-77496814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
2-211
               

               
Cow position:
               
chr3:48269645-48269854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
119, 101
               

               
Conread position:
               
2-212
               

               
Cow position:
               
chr3:57554064-57553858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
120, 14
               

               
Conread position:
               
2-212
               

               
Cow position:
               
chr3:83201746-83201535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
129, 163
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr3:13211125-13211339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr3:18051971-18051757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr3:21155387-21155601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
83, 167
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr3:28472309-28472523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
83, 167
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr3:28668738-28668524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr3:30753533-30753747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr3:40205252-40205038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr3:41227953-41228167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr3:45986311-45986517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 129
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr3:49287112-49287326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr3:51520116-51519902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr3:70871304-70871518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr3:80741821-80742035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 167
               

               
Conread position:
               
2-224
               

               
Cow position:
               
chr3:67862017-67861793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-226
               

               
Cow position:
               
chr3:36014108-36014335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-226
               

               
Cow position:
               
chr3:55837786-55838013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-226
               

               
Cow position:
               
chr3:67264738-67264965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
79, 174
               

               
Conread position:
               
2-229
               

               
Cow position:
               
chr3:52225370-52225600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-230
               

               
Cow position:
               
chr3:303172-303402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
83, 14
               

               
Conread position:
               
2-230
               

               
Cow position:
               
chr3:19827515-19827284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
83, 158
               

               
Conread position:
               
2-230
               

               
Cow position:
               
chr3:54495845-54496076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-230
               

               
Cow position:
               
chr3:79669061-79669292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-234
               

               
Cow position:
               
chr3:5851146-5850917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
29, 24
               

               
Conread position:
               
2-234
               

               
Cow position:
               
chr3:14923601-14923836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
82, 168
               

               
Conread position:
               
2-234
               

               
Cow position:
               
chr3:22490572-22490806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
83, 152
               

               
Conread position:
               
2-234
               

               
Cow position:
               
chr3:26217934-26217700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
110, 152
               

               
Conread position:
               
2-234
               

               
Cow position:
               
chr3:39080721-39080486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
79, 157
               

               
Conread position:
               
2-234
               

               
Cow position:
               
chr3:74061418-74061653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
2-236
               

               
Cow position:
               
chr3:6838982-6839219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 174
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr3:11410321-11410052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
83, 127
               

               
Conread position:
               
2-269
               

               
Cow position:
               
chr3:68877929-68877662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
87, 59
               

               
Conread position:
               
2-273
               

               
Cow position:
               
chr3:31047168-31046901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
120, 20
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr3:62321356-62321072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 147
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr3:74239870-74239587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
6, 154
               

               
Conread position:
               
2-306
               

               
Cow position:
               
chr3:13353139-13353445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 239
               

               
Conread position:
               
2-321
               

               
Cow position:
               
chr3:56059589-56059914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 20
               

               
Conread position:
               
2-337
               

               
Cow position:
               
chr3:73460760-73461083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
168, 63
               

               
Conread position:
               
2-354
               

               
Cow position:
               
chr3:75479794-75480133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
120, 27
               

               
Conread position:
               
2-354
               

               
Cow position:
               
chr3:78076971-78077325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 155
               

               
Conread position:
               
2-356
               

               
Cow position:
               
chr3:9641346-9641692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 27
               

               
Conread position:
               
2-356
               

               
Cow position:
               
chr3:38863899-38864255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 39
               

               
Conread position:
               
2-356
               

               
Cow position:
               
chr3:59610942-59610582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 56
               

               
Conread position:
               
2-366
               

               
Cow position:
               
chr3:11063160-11063514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 129
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr3:44932290-44932692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 268
               

               
Conread position:
               
2-401
               

               
Cow position:
               
chr3:73467401-73467811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
83, 5
               

               
Conread position:
               
2-413
               

               
Cow position:
               
chr3:26682012-26681628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 54
               

               
Conread position:
               
2-419
               

               
Cow position:
               
chr3:7337992-7337584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 106
               

               
Conread position:
               
2-420
               

               
Cow position:
               
chr3:50768460-50768885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 159
               

               
Conread position:
               
2-433
               

               
Cow position:
               
chr3:44352512-44352942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
83, 153
               

               
Conread position:
               
3-161
               

               
Cow position:
               
chr3:75534895-75535049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
81, 36
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr3:55836046-55835718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
119, 177
               

               
Conread position:
               
3-356
               

               
Cow position:
               
chr3:17937056-17936710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 116
               

               
Conread position:
               
3-356
               

               
Cow position:
               
chr3:29891635-29891269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
52, 214
               

               
Conread position:
               
4-89
               

               
Cow position:
               
chr3:59179189-59179274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
86
               

               
Alignm identity:
               
76
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-148
               

               
Cow position:
               
chr3:30531738-30531887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
81, 129
               

               
Conread position:
               
4-161
               

               
Cow position:
               
chr3:74088390-74088229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
4-172
               

               
Cow position:
               
chr3:79340058-79339884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
78, 129
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr3:31501131-31501310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
102, 126
               

               
Conread position:
               
4-182
               

               
Cow position:
               
chr3:51604823-51604637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
4-183
               

               
Cow position:
               
chr3:495460-495283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 120
               

               
Conread position:
               
4-185
               

               
Cow position:
               
chr3:11385457-11385646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
81, 170
               

               
Conread position:
               
4-187
               

               
Cow position:
               
chr3:51014054-51013870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 146
               

               
Conread position:
               
4-188
               

               
Cow position:
               
chr3:21100752-21100939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
81, 125
               

               
Conread position:
               
4-201
               

               
Cow position:
               
chr3:35283314-35283110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
118, 179
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr3:66603450-66603247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
81, 125
               

               
Conread position:
               
4-208
               

               
Cow position:
               
chr3:4087382-4087173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
80, 37
               

               
Conread position:
               
4-210
               

               
Cow position:
               
chr3:9843367-9843575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
139, 162
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr3:18066918-18067130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
118, 29
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr3:19789335-19789125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
40, 163
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr3:73590215-73590005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
115, 27
               

               
Conread position:
               
4-212
               

               
Cow position:
               
chr3:25754820-25755014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
118, 55
               

               
Conread position:
               
4-212
               

               
Cow position:
               
chr3:64716805-64717015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
81, 156
               

               
Conread position:
               
4-214
               

               
Cow position:
               
chr3:16362954-16362743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
81, 51
               

               
Conread position:
               
4-214
               

               
Cow position:
               
chr3:50922350-50922568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
81, 57
               

               
Conread position:
               
4-229
               

               
Cow position:
               
chr3:55106659-55106432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
84, 154
               

               
Conread position:
               
4-237
               

               
Cow position:
               
chr3:2364307-2364071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
81, 125
               

               
Conread position:
               
4-244
               

               
Cow position:
               
chr3:13899669-13899425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
80, 166
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr3:22907933-22907702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
182, 51
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr3:35005561-35005803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
117, 57
               

               
Conread position:
               
4-259
               

               
Cow position:
               
chr3:63332594-63332855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 185
               

               
Conread position:
               
4-259
               

               
Cow position:
               
chr3:72663245-72663506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
80, 153
               

               
Conread position:
               
4-263
               

               
Cow position:
               
chr3:5444022-5443765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
81, 50
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr3:21547318-21547058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
83, 134
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr3:34937624-34937886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
118, 37
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr3:36672219-36671953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
81, 165
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr3:50259085-50258818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
64, 159
               

               
Conread position:
               
4-266
               

               
Cow position:
               
chr3:65800377-65800629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
111, 41
               

               
Conread position:
               
4-267
               

               
Cow position:
               
chr3:61539580-61539846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
80, 178
               

               
Conread position:
               
4-267
               

               
Cow position:
               
chr3:61857280-61857551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
80, 237
               

               
Conread position:
               
4-268
               

               
Cow position:
               
chr3:25944861-25945139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
80, 184
               

               
Conread position:
               
4-271
               

               
Cow position:
               
chr3:72777024-72777288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
19, 95
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr3:15506231-15506509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 127
               

               
Conread position:
               
4-284
               

               
Cow position:
               
chr3:79950449-79950164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
81, 151
               

               
Conread position:
               
4-291
               

               
Cow position:
               
chr3:79220634-79220925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
82, 35
               

               
Conread position:
               
4-293
               

               
Cow position:
               
chr3:62826839-62826548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
100, 169
               

               
Conread position:
               
4-307
               

               
Cow position:
               
chr3:26553928-26553630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
80, 35
               

               
Conread position:
               
4-310
               

               
Cow position:
               
chr3:80071900-80072216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 299
               

               
Conread position:
               
4-311
               

               
Cow position:
               
chr3:26219278-26218960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 107
               

               
Conread position:
               
4-338
               

               
Cow position:
               
chr3:49327721-49328062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
4-347
               

               
Cow position:
               
chr3:70334918-70334564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
59, 8
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr3:4319494-4319847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
86, 108
               

               
Conread position:
               
4-355
               

               
Cow position:
               
chr3:78092726-78092375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 99
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr3:33253097-33252755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
80, 35
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr3:56476466-56476811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
118, 43
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr3:57754700-57754338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
80, 144
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr3:66900958-66900589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
84, 37
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr3:74533132-74533471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 95
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr3:80740356-80740693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
118, 35
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr3:80973137-80973488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
81, 98
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr3:83455368-83455016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
26, 21
               

               
Conread position:
               
4-381
               

               
Cow position:
               
chr3:51234312-51233941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
82, 34
               

               
Conread position:
               
4-401
               

               
Cow position:
               
chr3:525138-525517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
166, 27
               

               
Conread position:
               
4-401
               

               
Cow position:
               
chr3:24852803-24852407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
81, 101
               

               
Conread position:
               
4-406
               

               
Cow position:
               
chr3:16752469-16752064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
177, 30
               

               
Conread position:
               
4-408
               

               
Cow position:
               
chr3:45211079-45211497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
80, 39
               

               
Conread position:
               
4-417
               

               
Cow position:
               
chr3:67698063-67698479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
116, 35
               

               
Conread position:
               
4-419
               

               
Cow position:
               
chr3:79902287-79902699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
80, 37
               

               
Conread position:
               
5-120
               

               
Cow position:
               
chr3:5082857-5082742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-168
               

               
Cow position:
               
chr3:22900208-22900043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
5-170
               

               
Cow position:
               
chr3:58158682-58158521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
5-204
               

               
Cow position:
               
chr3:26973682-26973483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
65, 56
               

               
Conread position:
               
5-204
               

               
Cow position:
               
chr3:39171699-39171498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
116, 42
               

               
Conread position:
               
5-239
               

               
Cow position:
               
chr3:32152235-32152019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
177, 34
               

               
Conread position:
               
5-264
               

               
Cow position:
               
chr3:43307751-43307487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
80, 126
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr3:8393131-8393391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
79, 136
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr3:76713537-76713281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
79, 49
               

               
Conread position:
               
5-267
               

               
Cow position:
               
chr3:188644-188917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
79, 39
               

               
Conread position:
               
5-267
               

               
Cow position:
               
chr3:49461152-49460881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
5-273
               

               
Cow position:
               
chr3:14053270-14052999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
84, 151
               

               
Conread position:
               
5-280
               

               
Cow position:
               
chr3:23092198-23091918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
94, 190
               

               
Conread position:
               
5-283
               

               
Cow position:
               
chr3:57624252-57624525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
85, 26
               

               
Conread position:
               
5-284
               

               
Cow position:
               
chr3:6772813-6772530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
37, 164
               

               
Conread position:
               
5-317
               

               
Cow position:
               
chr3:55272258-55271946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
117, 42
               

               
Conread position:
               
5-323
               

               
Cow position:
               
chr3:17957251-17957569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
84, 29
               

               
Conread position:
               
5-328
               

               
Cow position:
               
chr3:74134490-74134810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
176, 26
               

               
Conread position:
               
5-328
               

               
Cow position:
               
chr3:81471316-81470990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
79, 36
               

               
Conread position:
               
5-348
               

               
Cow position:
               
chr3:73394901-73395244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
79, 163
               

               
Conread position:
               
5-354
               

               
Cow position:
               
chr3:70609407-70609760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 230
               

               
Conread position:
               
5-356
               

               
Cow position:
               
chr3:30463381-30463039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
117, 36
               

               
Conread position:
               
5-356
               

               
Cow position:
               
chr3:53046872-53046521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
79, 26
               

               
Conread position:
               
5-356
               

               
Cow position:
               
chr3:56612141-56612500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
80, 7
               

               
Conread position:
               
5-356
               

               
Cow position:
               
chr3:68647945-68648314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
79, 152
               

               
Conread position:
               
5-366
               

               
Cow position:
               
chr3:7331332-7330985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 154
               

               
Conread position:
               
5-407
               

               
Cow position:
               
chr3:76172879-76172492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
79, 100
               

               
Conread position:
               
5-414
               

               
Cow position:
               
chr3:54945909-54946318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 164
               

               
Conread position:
               
5-420
               

               
Cow position:
               
chr3:75080551-75080953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 153
               

               
Conread position:
               
5-421
               

               
Cow position:
               
chr3:2674814-2675236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 34
               

               
Conread position:
               
5-432
               

               
Cow position:
               
chr3:64281151-64280727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 162
               

               
Conread position:
               
6-107
               

               
Cow position:
               
chr3:15153425-15153527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
6-207
               

               
Cow position:
               
chr3:12287020-12287218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
149, 47
               

               
Conread position:
               
6-212
               

               
Cow position:
               
chr3:25059859-25060070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
77, 162
               

               
Conread position:
               
6-215
               

               
Cow position:
               
chr3:6078549-6078335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
79, 163
               

               
Conread position:
               
6-241
               

               
Cow position:
               
chr3:62790234-62789988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
78, 139
               

               
Conread position:
               
6-244
               

               
Cow position:
               
chr3:21341180-21340939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
64, 44
               

               
Conread position:
               
6-266
               

               
Cow position:
               
chr3:74878804-74878545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
78, 25
               

               
Conread position:
               
6-283
               

               
Cow position:
               
chr3:83845690-83845974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
100, 33
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chr3:70565952-70565599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 25
               

               
Conread position:
               
6-420
               

               
Cow position:
               
chr3:53739404-53738979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
116, 161
               

               
Conread position:
               
6-420
               

               
Cow position:
               
chr3:72473693-72474124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
7-163
               

               
Cow position:
               
chr3:59208601-59208757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
115, 27
               

               
Conread position:
               
7-207
               

               
Cow position:
               
chr3:21693728-21693934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
77, 144
               

               
Conread position:
               
7-267
               

               
Cow position:
               
chr3:14465921-14465661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
115, 42
               

               
Conread position:
               
8-416
               

               
Cow position:
               
chr3:36375760-36375342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
76, 214
               

               
Conread position:
               
10-264
               

               
Cow position:
               
chr3:27697193-27696936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
74, 151
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr3:3637972-3638239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 158
               

               
Conread position:
               
14-267
               

               
Cow position:
               
chr3:83727457-83727206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
69, 104
               

               
Conread position:
               
14-417
               

               
Cow position:
               
chr3:13302058-13301648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
69, 35
               

               
Conread position:
               
14-417
               

               
Cow position:
               
chr3:53270620-53271032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
74, 23
               

               
Conread position:
               
15-327
               

               
Cow position:
               
chr3:57760293-57760607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
68, 24
               

               
Conread position:
               
15-419
               

               
Cow position:
               
chr3:55712220-55712633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
73, 263
               

               
Conread position:
               
16-235
               

               
Cow position:
               
chr3:64172237-64172453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
17-267
               

               
Cow position:
               
chr3:53384491-53384235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
17-356
               

               
Cow position:
               
chr3:65413480-65413137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
105, 22
               

               
Conread position:
               
18-204
               

               
Cow position:
               
chr3:7940758-7940571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
104, 23
               

               
Conread position:
               
18-273
               

               
Cow position:
               
chr3:19708310-19708056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
5, 26
               

               
Conread position:
               
19-125
               

               
Cow position:
               
chr3:14801035-14800929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
19-349
               

               
Cow position:
               
chr3:14598745-14599059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
65, 142
               

               
Conread position:
               
20-291
               

               
Cow position:
               
chr3:53095140-53094864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
69, 161
               

               
Conread position:
               
22-212
               

               
Cow position:
               
chr3:62884004-62884198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
22-234
               

               
Cow position:
               
chr3:49218517-49218302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
41, 148
               

               
Conread position:
               
22-283
               

               
Cow position:
               
chr3:75711109-75711367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
91, 82
               

               
Conread position:
               
22-421
               

               
Cow position:
               
chr3:38828564-38828954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
42, 137
               

               
Conread position:
               
23-216
               

               
Cow position:
               
chr3:21051040-21050843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
25-252
               

               
Cow position:
               
chr3:70631819-70632051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
97, 65
               

               
Conread position:
               
26-193
               

               
Cow position:
               
chr3:65380955-65381121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
55, 119
               

               
Conread position:
               
26-251
               

               
Cow position:
               
chr3:77665974-77665741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
85, 60
               

               
Conread position:
               
26-265
               

               
Cow position:
               
chr3:22820370-22820614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
96, 217
               

               
Conread position:
               
26-266
               

               
Cow position:
               
chr3:59884271-59884025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
26-266
               

               
Cow position:
               
chr3:66610041-66609800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
96, 152
               

               
Conread position:
               
26-266
               

               
Cow position:
               
chr3:69750899-69750667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
96, 65
               

               
Conread position:
               
26-416
               

               
Cow position:
               
chr3:74754130-74754513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
133, 100
               

               
Conread position:
               
27-173
               

               
Cow position:
               
chr3:26894463-26894616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
27-256
               

               
Cow position:
               
chr3:36446914-36446684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
84, 91
               

               
Conread position:
               
27-381
               

               
Cow position:
               
chr3:28908397-28908053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
10, 29
               

               
Conread position:
               
27-418
               

               
Cow position:
               
chr3:30940623-30941004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
77, 34
               

               
Conread position:
               
28-226
               

               
Cow position:
               
chr3:21302627-21302445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
29-263
               

               
Cow position:
               
chr3:23448331-23448096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 8
               

               
Conread position:
               
29-293
               

               
Cow position:
               
chr3:60265436-60265183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
80, 8
               

               
Conread position:
               
29-312
               

               
Cow position:
               
chr3:58969096-58968817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
50, 122
               

               
Conread position:
               
29-355
               

               
Cow position:
               
chr3:8060932-8061260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
93, 122
               

               
Conread position:
               
29-356
               

               
Cow position:
               
chr3:74079834-74079501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 222
               

               
Conread position:
               
29-414
               

               
Cow position:
               
chr3:55319098-55318701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
53, 295
               

               
Conread position:
               
29-421
               

               
Cow position:
               
chr3:12705741-12705346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 261
               

               
Conread position:
               
30-264
               

               
Cow position:
               
chr3:66884135-66883902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
53, 127
               

               
Conread position:
               
30-266
               

               
Cow position:
               
chr3:17895657-17895893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
125, 22
               

               
Conread position:
               
30-273
               

               
Cow position:
               
chr3:116003-116240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
54, 74
               

               
Conread position:
               
30-323
               

               
Cow position:
               
chr3:83215059-83215361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
53, 266
               

               
Conread position:
               
30-349
               

               
Cow position:
               
chr3:57273872-57274189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
90, 69
               

               
Conread position:
               
30-356
               

               
Cow position:
               
chr3:38035786-38035451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
55, 138
               

               
Conread position:
               
30-356
               

               
Cow position:
               
chr3:53221820-53222149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 110
               

               
Conread position:
               
30-356
               

               
Cow position:
               
chr3:53875953-53875625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
93, 126
               

               
Conread position:
               
30-357
               

               
Cow position:
               
chr3:74600922-74601248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
91, 29
               

               
Conread position:
               
30-394
               

               
Cow position:
               
chr3:18686713-18687080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
92, 137
               

               
Conread position:
               
30-395
               

               
Cow position:
               
chr3:6182394-6182053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
262, 91
               

               
Conread position:
               
30-402
               

               
Cow position:
               
chr3:73764390-73764028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
59, 132
               

               
Conread position:
               
30-418
               

               
Cow position:
               
chr3:61224927-61224550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
140, 35
               

               
Conread position:
               
30-439
               

               
Cow position:
               
chr3:23105560-23105142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 271
               

               
Conread position:
               
33-267
               

               
Cow position:
               
chr3:83798030-83797789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 128
               

               
Conread position:
               
33-283
               

               
Cow position:
               
chr3:63269034-63269284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
89, 36
               

               
Conread position:
               
33-361
               

               
Cow position:
               
chr3:23408542-23408221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
89, 30
               

               
Conread position:
               
33-369
               

               
Cow position:
               
chr3:54374052-54373706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
31, 135
               

               
Conread position:
               
34-410
               

               
Cow position:
               
chr3:68156551-68156918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
72, 27
               

               
Conread position:
               
35-204
               

               
Cow position:
               
chr3:27212173-27212346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
69, 23
               

               
Conread position:
               
36-328
               

               
Cow position:
               
chr3:17935122-17934831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
147, 62
               

               
Conread position:
               
39-267
               

               
Cow position:
               
chr3:1453307-1453081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
50, 68
               

               
Conread position:
               
39-278
               

               
Cow position:
               
chr3:67930367-67930131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
83, 47
               

               
Conread position:
               
39-293
               

               
Cow position:
               
chr3:81371462-81371720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
39-344
               

               
Cow position:
               
chr3:20678020-20677724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
78, 72
               

               
Conread position:
               
39-422
               

               
Cow position:
               
chr3:22232837-22232465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
83, 111
               

               
Conread position:
               
39-423
               

               
Cow position:
               
chr3:1830754-1830368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
116, 83
               

               
Conread position:
               
40-194
               

               
Cow position:
               
chr3:34294469-34294310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
40-264
               

               
Cow position:
               
chr3:79092579-79092350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
44, 123
               

               
Conread position:
               
40-268
               

               
Cow position:
               
chr3:14626342-14626104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
44, 141
               

               
Conread position:
               
40-322
               

               
Cow position:
               
chr3:58767084-58767361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 64
               

               
Conread position:
               
40-355
               

               
Cow position:
               
chr3:32584972-32585281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
82, 15
               

               
Conread position:
               
40-356
               

               
Cow position:
               
chr3:54506525-54506843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
123, 71
               

               
Conread position:
               
41-195
               

               
Cow position:
               
chr3:61191107-61190951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
71, 134
               

               
Conread position:
               
41-214
               

               
Cow position:
               
chr3:74409301-74409477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
81, 19
               

               
Conread position:
               
41-267
               

               
Cow position:
               
chr3:44837565-44837331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 84
               

               
Conread position:
               
41-354
               

               
Cow position:
               
chr3:68627864-68627552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
254, 71
               

               
Conread position:
               
41-356
               

               
Cow position:
               
chr3:75158176-75158495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
82, 266
               

               
Conread position:
               
41-415
               

               
Cow position:
               
chr3:81087803-81087440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
41-421
               

               
Cow position:
               
chr3:55189939-55189547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 58
               

               
Conread position:
               
42-356
               

               
Cow position:
               
chr3:79094230-79093921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
64, 157
               

               
Conread position:
               
42-399
               

               
Cow position:
               
chr3:15052134-15051768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
80, 200
               

               
Conread position:
               
43-236
               

               
Cow position:
               
chr3:49793222-49793411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
97, 60
               

               
Conread position:
               
43-283
               

               
Cow position:
               
chr3:34669909-34669672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 131
               

               
Conread position:
               
45-290
               

               
Cow position:
               
chr3:54782196-54781935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
77, 105
               

               
Conread position:
               
45-356
               

               
Cow position:
               
chr3:70762302-70761986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
66, 146
               

               
Conread position:
               
45-411
               

               
Cow position:
               
chr3:76922842-76922480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
77, 155
               

               
Conread position:
               
46-400
               

               
Cow position:
               
chr3:36418644-36418306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
69, 119
               

               
Conread position:
               
47-264
               

               
Cow position:
               
chr3:62046485-62046706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
47-266
               

               
Cow position:
               
chr3:15153513-15153735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
9, 101
               

               
Conread position:
               
49-293
               

               
Cow position:
               
chr3:26874415-26874661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
53, 19
               

               
Conread position:
               
49-354
               

               
Cow position:
               
chr3:19585687-19585999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
73, 18
               

               
Conread position:
               
49-406
               

               
Cow position:
               
chr3:55819572-55819937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
41, 232
               

               
Conread position:
               
50-329
               

               
Cow position:
               
chr3:59799073-59799351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
72, 129
               

               
Conread position:
               
55-264
               

               
Cow position:
               
chr3:32787291-32787502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
34, 103
               

               
Conread position:
               
55-356
               

               
Cow position:
               
chr3:60264884-60264584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
67, 33
               

               
Conread position:
               
58-316
               

               
Cow position:
               
chr3:73915970-73915716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 50
               

               
Conread position:
               
58-353
               

               
Cow position:
               
chr3:68616491-68616201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
53, 154
               

               
Conread position:
               
59-356
               

               
Cow position:
               
chr3:48073039-48072746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 56
               

               
Conread position:
               
61-328
               

               
Cow position:
               
chr3:50069601-50069871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
45, 82
               

               
Conread position:
               
63-328
               

               
Cow position:
               
chr3:53508460-53508721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
227, 100
               

               
Conread position:
               
64-327
               

               
Cow position:
               
chr3:74242835-74243093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
58, 100
               

               
Conread position:
               
65-267
               

               
Cow position:
               
chr3:59034874-59035085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
72-410
               

               
Cow position:
               
chr3:55177905-55177560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
14, 232
               

               
Conread position:
               
74-358
               

               
Cow position:
               
chr3:79196609-79196899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
48, 63
               

               
Conread position:
               
78-273
               

               
Cow position:
               
chr3:62789326-62789124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
78-356
               

               
Cow position:
               
chr3:3883965-3883683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
44, 101
               

               
Conread position:
               
81-266
               

               
Cow position:
               
chr3:1785385-1785201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
45, 83
               

               
Conread position:
               
86-328
               

               
Cow position:
               
chr3:78093522-78093283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 83
               

               
Conread position:
               
87-433
               

               
Cow position:
               
chr3:73237057-73237413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
36, 220
               

               
Conread position:
               
113-355
               

               
Cow position:
               
chr3:32409104-32409356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
68, 9
               

               
Conread position:
               
113-360
               

               
Cow position:
               
chr3:71474517-71474266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
15, 102
               

               
Conread position:
               
113-361
               

               
Cow position:
               
chr3:15951019-15950776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
69, 46
               

               
Conread position:
               
113-421
               

               
Cow position:
               
chr3:59604737-59605044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
50, 62
               

               
Conread position:
               
114-414
               

               
Cow position:
               
chr3:58134794-58134487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
67, 60
               

               
Conread position:
               
115-418
               

               
Cow position:
               
chr3:69785732-69785420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
66, 54
               

               
Conread position:
               
122-288
               

               
Cow position:
               
chr3:12670714-12670549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 136
               

               
Conread position:
               
122-349
               

               
Cow position:
               
chr3:19626608-19626377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 181
               

               
Conread position:
               
122-381
               

               
Cow position:
               
chr3:31361319-31361586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 82
               

               
Conread position:
               
133-356
               

               
Cow position:
               
chr3:31350193-31349971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 39
               

               
Conread position:
               
133-356
               

               
Cow position:
               
chr3:75608409-75608625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
30, 97
               

               
Conread position:
               
134-354
               

               
Cow position:
               
chr3:18607575-18607798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
31, 158
               

               
Conread position:
               
136-415
               

               
Cow position:
               
chr3:64196739-64197023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
28, 40
               

               
Conread position:
               
139-408
               

               
Cow position:
               
chr3:54982163-54981896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
26, 110
               

               
Conread position:
               
139-410
               

               
Cow position:
               
chr3:59299494-59299764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
115, 34
               
Show alignments to all cow chromosomes.