Cow genome map

Conread name: Ss1.1-rthg26_l18.5

Conread position: 7-411
Cow position: chr1:30058340-30058759 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 273
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 5, 37

Conread position: 7-411
Cow position: chr1:102435238-102434819 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 132

Conread position: 8-409
Cow position: chr1:28872869-28873292 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 195

Conread position: 8-409
Cow position: chr1:42736249-42736671 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 162

Conread position: 8-409
Cow position: chr1:72187079-72186654 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 193

Conread position: 9-322
Cow position: chr1:82407547-82407214 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 223
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 48, 266

Conread position: 9-409
Cow position: chr1:89899909-89899485 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 194

Conread position: 9-409
Cow position: chr1:97123625-97124025 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 296
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 39, 182

Conread position: 11-221
Cow position: chr1:89809825-89809597 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 170
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 38, 189

Conread position: 11-264
Cow position: chr1:6708296-6708021 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 201
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 32, 188

Conread position: 11-274
Cow position: chr1:40513702-40513418 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 207
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 38, 185

Conread position: 11-289
Cow position: chr1:62806011-62805707 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 221
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 38, 192

Conread position: 11-302
Cow position: chr1:69922668-69922354 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 229
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 44, 172

Conread position: 11-335
Cow position: chr1:29950512-29950176 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 229
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 83

Conread position: 11-341
Cow position: chr1:13879930-13880287 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 240
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 41, 195

Conread position: 11-349
Cow position: chr1:3386211-3385848 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 191

Conread position: 11-372
Cow position: chr1:55775949-55776331 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 104

Conread position: 11-383
Cow position: chr1:25549858-25550249 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 235
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 44, 191

Conread position: 11-392
Cow position: chr1:52918821-52918423 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 269
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 46, 112

Conread position: 11-394
Cow position: chr1:38387841-38387477 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 177

Conread position: 11-395
Cow position: chr1:69536705-69537104 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 184

Conread position: 11-409
Cow position: chr1:1461532-1461113 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 190

Conread position: 11-409
Cow position: chr1:8824857-8825269 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 123

Conread position: 11-409
Cow position: chr1:18244594-18244166 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 201

Conread position: 11-409
Cow position: chr1:18406395-18405979 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 164

Conread position: 11-409
Cow position: chr1:25180236-25179812 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 192

Conread position: 11-409
Cow position: chr1:28801631-28801183 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 198

Conread position: 11-409
Cow position: chr1:45097503-45097915 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 186

Conread position: 11-409
Cow position: chr1:49974396-49973972 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 192

Conread position: 11-409
Cow position: chr1:57567745-57568170 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 11-409
Cow position: chr1:57656353-57656763 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 179

Conread position: 11-409
Cow position: chr1:58335631-58336053 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 192

Conread position: 11-409
Cow position: chr1:62244853-62244429 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 192

Conread position: 11-409
Cow position: chr1:62854032-62853627 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 47

Conread position: 11-409
Cow position: chr1:63605988-63605563 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 193

Conread position: 11-409
Cow position: chr1:69402787-69403198 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 192

Conread position: 11-409
Cow position: chr1:72981062-72981485 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 192

Conread position: 11-409
Cow position: chr1:76545745-76545321 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 189

Conread position: 11-409
Cow position: chr1:76752855-76752435 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 171

Conread position: 11-409
Cow position: chr1:79457172-79456754 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 105

Conread position: 11-409
Cow position: chr1:86699423-86698999 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 192

Conread position: 11-409
Cow position: chr1:88635170-88635589 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 188

Conread position: 11-409
Cow position: chr1:89740448-89740050 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 158

Conread position: 11-409
Cow position: chr1:93854315-93854739 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 363

Conread position: 11-409
Cow position: chr1:97226905-97226492 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 186

Conread position: 11-409
Cow position: chr1:101149638-101150051 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 94

Conread position: 11-411
Cow position: chr1:57367337-57366912 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 191

Conread position: 11-414
Cow position: chr1:40307862-40308285 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 191

Conread position: 11-418
Cow position: chr1:87244594-87245037 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 375

Conread position: 14-409
Cow position: chr1:13645529-13645930 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 185

Conread position: 14-409
Cow position: chr1:18880587-18880174 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 181

Conread position: 14-409
Cow position: chr1:63501258-63501672 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 278
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 33, 190

Conread position: 14-409
Cow position: chr1:67286288-67286704 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 293
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 47, 101

Conread position: 14-409
Cow position: chr1:67835340-67834921 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 188

Conread position: 14-409
Cow position: chr1:78289679-78290082 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 189

Conread position: 14-409
Cow position: chr1:87207613-87207209 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 182

Conread position: 15-409
Cow position: chr1:72656781-72657205 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 90

Conread position: 19-406
Cow position: chr1:56144527-56144123 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 176

Conread position: 19-409
Cow position: chr1:76623142-76622739 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 114

Conread position: 19-409
Cow position: chr1:85780975-85780562 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 58

Conread position: 20-409
Cow position: chr1:38414611-38415016 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 176

Conread position: 20-410
Cow position: chr1:25887341-25886941 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 145

Conread position: 23-407
Cow position: chr1:54366011-54365612 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 142

Conread position: 26-409
Cow position: chr1:34689152-34689558 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 53

Conread position: 45-409
Cow position: chr1:79637086-79636716 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 13

Conread position: 47-414
Cow position: chr1:12062353-12061974 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 16

Conread position: 49-335
Cow position: chr1:73009648-73009936 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 203
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 61, 9

Conread position: 49-354
Cow position: chr1:53045934-53045625 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 220
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 76, 9

Conread position: 49-400
Cow position: chr1:30027698-30027337 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 11

Conread position: 49-409
Cow position: chr1:100597536-100597155 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 10

Conread position: 56-409
Cow position: chr1:99910803-99911177 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 16

Conread position: 60-403
Cow position: chr1:99021100-99020749 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 243
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 65, 142

Conread position: 61-378
Cow position: chr1:85533552-85533222 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 218
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 11, 91

Conread position: 61-413
Cow position: chr1:5318616-5318964 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 234
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 63, 137

Conread position: 63-209
Cow position: chr1:22864060-22863905 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 56, 128

Conread position: 63-253
Cow position: chr1:40953568-40953762 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 151
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 72, 56

Conread position: 63-306
Cow position: chr1:59674347-59674594 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 171
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 56, 94

Conread position: 63-319
Cow position: chr1:15347727-15347456 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-350
Cow position: chr1:11863378-11863084 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 125

Conread position: 63-374
Cow position: chr1:79920869-79920544 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 129

Conread position: 63-392
Cow position: chr1:19992819-19992481 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 229
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 55, 119

Conread position: 63-392
Cow position: chr1:61738644-61738312 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 219
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 62, 128

Conread position: 63-393
Cow position: chr1:89425448-89425789 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 13

Conread position: 63-395
Cow position: chr1:23050698-23051041 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 248
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 58, 106

Conread position: 63-406
Cow position: chr1:80359311-80358965 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 128

Conread position: 63-409
Cow position: chr1:8554186-8554547 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 129

Conread position: 63-409
Cow position: chr1:11292246-11291888 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 222

Conread position: 63-409
Cow position: chr1:13450068-13450425 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 127

Conread position: 63-409
Cow position: chr1:17012878-17012520 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 219

Conread position: 63-409
Cow position: chr1:17036700-17036338 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr1:22000098-21999739 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr1:28710774-28711135 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr1:33550780-33551136 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 125

Conread position: 63-409
Cow position: chr1:33711921-33712282 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 132

Conread position: 63-409
Cow position: chr1:33851137-33851497 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 103

Conread position: 63-409
Cow position: chr1:33895537-33895898 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr1:39543629-39543988 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr1:40684832-40684472 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 91

Conread position: 63-409
Cow position: chr1:42290253-42290606 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 127

Conread position: 63-409
Cow position: chr1:48245669-48246032 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr1:52359418-52359059 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr1:55276628-55276266 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr1:56163184-56163545 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr1:56194073-56193713 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 17

Conread position: 63-409
Cow position: chr1:56489697-56490059 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 130

Conread position: 63-409
Cow position: chr1:56723013-56723373 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 129

Conread position: 63-409
Cow position: chr1:59210276-59209920 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 13

Conread position: 63-409
Cow position: chr1:59933411-59933758 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 129

Conread position: 63-409
Cow position: chr1:61308860-61309221 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr1:62925471-62925832 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 288

Conread position: 63-409
Cow position: chr1:68607690-68607325 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 133

Conread position: 63-409
Cow position: chr1:69766322-69766681 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 127

Conread position: 63-409
Cow position: chr1:71562720-71562355 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 129

Conread position: 63-409
Cow position: chr1:72080630-72080997 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 132

Conread position: 63-409
Cow position: chr1:72136499-72136858 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 130

Conread position: 63-409
Cow position: chr1:82564362-82564722 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 128

Conread position: 63-409
Cow position: chr1:82918800-82918446 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 11

Conread position: 63-409
Cow position: chr1:86548276-86547916 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 129

Conread position: 63-409
Cow position: chr1:88130616-88130989 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 312

Conread position: 63-409
Cow position: chr1:89770825-89770466 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr1:91718776-91718420 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 103

Conread position: 63-409
Cow position: chr1:91898859-91899215 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 13

Conread position: 63-409
Cow position: chr1:99349160-99348819 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 56

Conread position: 63-409
Cow position: chr1:101858126-101857767 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 129

Conread position: 63-410
Cow position: chr1:37419889-37419533 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 26

Conread position: 63-412
Cow position: chr1:40053213-40053577 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 64-350
Cow position: chr1:86609054-86609347 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 207
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 10, 130

Conread position: 64-408
Cow position: chr1:102549089-102549463 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 272
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 55, 127

Conread position: 64-409
Cow position: chr1:20828748-20829108 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 128

Conread position: 64-409
Cow position: chr1:21087272-21087632 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 128

Conread position: 64-409
Cow position: chr1:31366218-31365858 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 128

Conread position: 64-409
Cow position: chr1:52233252-52232897 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 31

Conread position: 64-409
Cow position: chr1:85791548-85791905 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 126

Conread position: 65-286
Cow position: chr1:17941951-17941715 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 58, 127

Conread position: 66-388
Cow position: chr1:44101883-44101550 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 220
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 44, 29

Conread position: 66-411
Cow position: chr1:39482120-39481762 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 231
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 57, 129

Conread position: 70-408
Cow position: chr1:79109160-79109498 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 238
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 40, 130

Conread position: 70-411
Cow position: chr1:98783921-98784270 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 239
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 54, 275

Conread position: 73-409
Cow position: chr1:91893246-91892905 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 12

Conread position: 76-409
Cow position: chr1:30283671-30283324 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 116

Conread position: 79-409
Cow position: chr1:79335931-79335586 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 113

Conread position: 102-409
Cow position: chr1:82924271-82923961 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 193
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 110, 80

Conread position: 131-406
Cow position: chr1:77117654-77117371 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 209
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 83, 7

Conread position: 132-409
Cow position: chr1:73071120-73070838 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 53

Conread position: 132-412
Cow position: chr1:31125987-31125711 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 187
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 81, 53

Conread position: 136-392
Cow position: chr1:32342134-32341874 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 190
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 60, 106

Conread position: 136-408
Cow position: chr1:89479262-89479523 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 204
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 76, 49

Conread position: 136-409
Cow position: chr1:29362237-29362515 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 46

Conread position: 136-409
Cow position: chr1:40574156-40574434 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 46

Conread position: 136-409
Cow position: chr1:58884127-58883849 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 46

Conread position: 136-409
Cow position: chr1:60339246-60339524 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 46

Conread position: 136-411
Cow position: chr1:20988893-20989176 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 196
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 79, 49

Conread position: 137-415
Cow position: chr1:15025839-15026114 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 194
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 248, 48

Conread position: 138-400
Cow position: chr1:67901975-67901721 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 194
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 247, 28

Conread position: 146-409
Cow position: chr1:94659643-94659900 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 199
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 68, 8

Conread position: 148-409
Cow position: chr1:28722825-28723092 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 34

Conread position: 155-410
Cow position: chr1:88270636-88270385 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 188
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 48, 38

Conread position: 164-409
Cow position: chr1:31396659-31396909 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 188
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 48, 18

Conread position: 167-350
Cow position: chr1:58201700-58201509 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 36, 18

Conread position: 172-409
Cow position: chr1:82652629-82652872 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 184
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 40, 183

Conread position: 183-409
Cow position: chr1:85881999-85882221 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 173
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 202, 5

Conread position: 184-409
Cow position: chr1:55323067-55322839 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 151

Conread position: 189-411
Cow position: chr1:46835524-46835744 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 154
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 15, 0

Conread position: 214-409
Cow position: chr1:82913120-82912925 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 171, 134

Conread position: 229-409
Cow position: chr1:95239408-95239588 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 129, 110

Conread position: 232-406
Cow position: chr1:84149461-84149636 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 13, 109

Conread position: 248-414
Cow position: chr1:5501991-5502156 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 137, 100

Show alignments to all cow chromosomes.