Cow genome map

Conread name: Ss1.1-rthg26_l18.5

Conread position: 3-392
Cow position: chr10:184076-184494 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 274
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 59, 201

Conread position: 6-409
Cow position: chr10:34685709-34686135 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 194

Conread position: 6-409
Cow position: chr10:62409038-62408615 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 193

Conread position: 10-380
Cow position: chr10:19511423-19511818 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 193

Conread position: 11-409
Cow position: chr10:124128-124552 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 192

Conread position: 11-409
Cow position: chr10:1375355-1375773 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 193

Conread position: 11-409
Cow position: chr10:7282864-7282445 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 189

Conread position: 11-409
Cow position: chr10:8289802-8290220 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 191

Conread position: 11-409
Cow position: chr10:13366034-13365628 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 194

Conread position: 11-409
Cow position: chr10:25359218-25359641 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 191

Conread position: 11-409
Cow position: chr10:25498174-25498594 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 188

Conread position: 11-409
Cow position: chr10:29633040-29632621 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 191

Conread position: 11-409
Cow position: chr10:29696060-29696477 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 53

Conread position: 11-409
Cow position: chr10:31523658-31524040 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 279
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 41, 111

Conread position: 11-409
Cow position: chr10:32650551-32650975 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 192

Conread position: 11-409
Cow position: chr10:37769641-37770063 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 192

Conread position: 11-409
Cow position: chr10:38538675-38538255 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 188

Conread position: 11-409
Cow position: chr10:39041486-39041060 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 96

Conread position: 11-409
Cow position: chr10:41566929-41567345 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 188

Conread position: 11-409
Cow position: chr10:46191193-46191600 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 178

Conread position: 11-409
Cow position: chr10:47906599-47907020 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 189

Conread position: 11-409
Cow position: chr10:62216425-62216848 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 192

Conread position: 11-411
Cow position: chr10:34318443-34318051 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 115

Conread position: 14-261
Cow position: chr10:57990142-57989872 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 194
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 35, 189

Conread position: 14-393
Cow position: chr10:51952780-51952392 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 185

Conread position: 14-397
Cow position: chr10:4192390-4192003 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 183

Conread position: 14-409
Cow position: chr10:38345541-38345120 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 189

Conread position: 16-354
Cow position: chr10:32063976-32064335 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 236
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 31, 0

Conread position: 19-316
Cow position: chr10:60489493-60489803 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 89

Conread position: 20-341
Cow position: chr10:4499536-4499855 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 38

Conread position: 48-411
Cow position: chr10:24978263-24977895 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 250
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 77, 22

Conread position: 56-303
Cow position: chr10:3543700-3543445 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 184
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 65, 122

Conread position: 61-312
Cow position: chr10:22842660-22842918 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 191
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 59, 134

Conread position: 62-409
Cow position: chr10:41876799-41877160 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 130

Conread position: 63-244
Cow position: chr10:65308005-65308201 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 151
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 56, 128

Conread position: 63-290
Cow position: chr10:29846728-29846486 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 184
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 56, 129

Conread position: 63-367
Cow position: chr10:38847251-38847557 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 126

Conread position: 63-374
Cow position: chr10:54059473-54059150 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 128

Conread position: 63-394
Cow position: chr10:22101123-22101459 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 119

Conread position: 63-394
Cow position: chr10:58377706-58377367 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 235
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 61, 19

Conread position: 63-395
Cow position: chr10:276475-276817 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 129

Conread position: 63-409
Cow position: chr10:280738-280379 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 111

Conread position: 63-409
Cow position: chr10:10415312-10415640 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 250
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 55, 78

Conread position: 63-409
Cow position: chr10:11685786-11685429 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 130

Conread position: 63-409
Cow position: chr10:14803716-14804078 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 130

Conread position: 63-409
Cow position: chr10:14859859-14860208 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 254
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 62, 130

Conread position: 63-409
Cow position: chr10:15862253-15861895 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 127

Conread position: 63-409
Cow position: chr10:19496396-19496044 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 120

Conread position: 63-409
Cow position: chr10:21400790-21400429 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr10:21486798-21487157 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 63-409
Cow position: chr10:21740870-21740510 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 129

Conread position: 63-409
Cow position: chr10:25565364-25565016 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 129

Conread position: 63-409
Cow position: chr10:38546341-38545983 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 183

Conread position: 63-409
Cow position: chr10:39817468-39817121 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 32

Conread position: 63-409
Cow position: chr10:39854133-39853768 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 129

Conread position: 63-409
Cow position: chr10:39904808-39905183 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 130

Conread position: 63-409
Cow position: chr10:41157332-41157689 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 13

Conread position: 63-409
Cow position: chr10:57559667-57559294 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 128

Conread position: 63-409
Cow position: chr10:62778227-62778589 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 129

Conread position: 63-421
Cow position: chr10:10478262-10477887 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 99

Conread position: 64-409
Cow position: chr10:19143456-19143096 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 127

Conread position: 64-409
Cow position: chr10:32578186-32578531 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 127

Conread position: 64-409
Cow position: chr10:39179666-39180025 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 128

Conread position: 65-308
Cow position: chr10:19840036-19840294 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 199
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 54, 127

Conread position: 66-392
Cow position: chr10:24313944-24313611 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 218
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 59, 164

Conread position: 66-409
Cow position: chr10:42628545-42628865 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 246
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 53, 89

Conread position: 70-395
Cow position: chr10:41351866-41351532 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 126

Conread position: 76-395
Cow position: chr10:14951793-14952097 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 225
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 9, 47

Conread position: 78-379
Cow position: chr10:66176004-66175694 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 212
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 43, 125

Conread position: 82-414
Cow position: chr10:24298951-24298608 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 82

Conread position: 84-409
Cow position: chr10:16925437-16925778 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 113

Conread position: 91-409
Cow position: chr10:46694466-46694134 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 101

Conread position: 132-409
Cow position: chr10:2123302-2123020 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 50

Conread position: 136-395
Cow position: chr10:40751616-40751876 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 182
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 57, 20

Conread position: 139-364
Cow position: chr10:49310473-49310699 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 172
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 75, 46

Conread position: 147-370
Cow position: chr10:54979905-54979681 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 173
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 69, 35

Conread position: 151-406
Cow position: chr10:40152475-40152216 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 31

Conread position: 167-395
Cow position: chr10:20371968-20371746 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 171
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 95, 26

Conread position: 171-409
Cow position: chr10:55093241-55093481 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 186
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 43, 11

Conread position: 172-369
Cow position: chr10:39445139-39444939 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 31, 13

Conread position: 184-298
Cow position: chr10:25454601-25454721 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 195-388
Cow position: chr10:11820361-11820555 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 137
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 57, 37

Conread position: 202-409
Cow position: chr10:33346636-33346842 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 157
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 183, 56

Conread position: 204-368
Cow position: chr10:10581829-10581997 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 49, 78

Conread position: 204-409
Cow position: chr10:19758388-19758590 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 154, 140

Conread position: 204-411
Cow position: chr10:41389506-41389300 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 143
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 202, 75

Conread position: 214-409
Cow position: chr10:28931978-28931783 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 150
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 170, 134

Conread position: 232-380
Cow position: chr10:23431873-23432024 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 232-409
Cow position: chr10:8328209-8328027 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 137
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 24, 0

Conread position: 292-409
Cow position: chr10:47157073-47157190 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 93, 61

Show alignments to all cow chromosomes.