Cow genome map

Conread name: Ss1.1-rthg26_l18.5

Conread position: 2-420
Cow position:
Alignm length: 447
Alignm identity: 281
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 10, 125

Conread position: 5-407
Cow position:
Alignm length: 424
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 45

Conread position: 6-186
Cow position:
Alignm length: 194
Alignm identity: 142
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 46, 188

Conread position: 11-378
Cow position:
Alignm length: 384
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 183

Conread position: 11-395
Cow position:
Alignm length: 412
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 191

Conread position: 11-409
Cow position:
Alignm length: 422
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 189

Conread position: 11-409
Cow position:
Alignm length: 422
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 161

Conread position: 11-409
Cow position:
Alignm length: 415
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 38

Conread position: 11-409
Cow position:
Alignm length: 423
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 188

Conread position: 11-409
Cow position:
Alignm length: 424
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 189

Conread position: 11-409
Cow position:
Alignm length: 432
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 186

Conread position: 11-409
Cow position:
Alignm length: 426
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 192

Conread position: 11-409
Cow position:
Alignm length: 416
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 126

Conread position: 11-409
Cow position:
Alignm length: 426
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 73

Conread position: 11-409
Cow position:
Alignm length: 427
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 192

Conread position: 11-409
Cow position:
Alignm length: 428
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 192

Conread position: 11-409
Cow position:
Alignm length: 414
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 33

Conread position: 11-409
Cow position:
Alignm length: 423
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 187

Conread position: 11-409
Cow position:
Alignm length: 424
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 189

Conread position: 11-409
Cow position:
Alignm length: 431
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 190

Conread position: 11-409
Cow position:
Alignm length: 425
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 190

Conread position: 11-410
Cow position:
Alignm length: 425
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 189

Conread position: 14-408
Cow position:
Alignm length: 424
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 47

Conread position: 14-409
Cow position:
Alignm length: 416
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 69

Conread position: 14-409
Cow position:
Alignm length: 412
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 29

Conread position: 14-409
Cow position:
Alignm length: 419
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 184

Conread position: 14-409
Cow position:
Alignm length: 416
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 159

Conread position: 14-409
Cow position:
Alignm length: 421
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 186

Conread position: 14-409
Cow position:
Alignm length: 425
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 189

Conread position: 14-409
Cow position:
Alignm length: 420
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 185

Conread position: 14-409
Cow position:
Alignm length: 421
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 92

Conread position: 14-418
Cow position:
Alignm length: 421
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 182

Conread position: 14-418
Cow position:
Alignm length: 428
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 19-384
Cow position:
Alignm length: 390
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 47

Conread position: 23-405
Cow position:
Alignm length: 401
Alignm identity: 277
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 34, 67

Conread position: 48-256
Cow position:
Alignm length: 225
Alignm identity: 165
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 71, 18

Conread position: 48-391
Cow position:
Alignm length: 357
Alignm identity: 230
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 17, 147

Conread position: 48-409
Cow position:
Alignm length: 375
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 20

Conread position: 49-401
Cow position:
Alignm length: 366
Alignm identity: 240
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 74, 105

Conread position: 49-409
Cow position:
Alignm length: 374
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 17

Conread position: 58-409
Cow position:
Alignm length: 365
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 15

Conread position: 63-256
Cow position:
Alignm length: 210
Alignm identity: 153
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 58, 38

Conread position: 63-395
Cow position:
Alignm length: 350
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-397
Cow position:
Alignm length: 349
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 129

Conread position: 63-397
Cow position:
Alignm length: 347
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 125

Conread position: 63-404
Cow position:
Alignm length: 357
Alignm identity: 243
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 62, 94

Conread position: 63-408
Cow position:
Alignm length: 358
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 60

Conread position: 63-409
Cow position:
Alignm length: 362
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 127

Conread position: 63-409
Cow position:
Alignm length: 363
Alignm identity: 260
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 47, 101

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 129

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position:
Alignm length: 360
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position:
Alignm length: 360
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 128

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 129

Conread position: 63-409
Cow position:
Alignm length: 366
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 129

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 129

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position:
Alignm length: 373
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 131

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 129

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position:
Alignm length: 358
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 296

Conread position: 63-409
Cow position:
Alignm length: 360
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 128

Conread position: 63-409
Cow position:
Alignm length: 363
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 128

Conread position: 63-409
Cow position:
Alignm length: 360
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-411
Cow position:
Alignm length: 359
Alignm identity: 239
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 134, 41

Conread position: 63-431
Cow position:
Alignm length: 381
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 127

Conread position: 64-409
Cow position:
Alignm length: 370
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 131

Conread position: 65-409
Cow position:
Alignm length: 361
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 125

Conread position: 69-333
Cow position:
Alignm length: 285
Alignm identity: 197
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 56, 137

Conread position: 79-409
Cow position:
Alignm length: 348
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 111

Conread position: 82-410
Cow position:
Alignm length: 347
Alignm identity: 239
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 19, 113

Conread position: 101-409
Cow position:
Alignm length: 327
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 91

Conread position: 112-392
Cow position:
Alignm length: 284
Alignm identity: 192
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 127, 16

Conread position: 129-411
Cow position:
Alignm length: 286
Alignm identity: 201
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 11, 37

Conread position: 136-256
Cow position:
Alignm length: 122
Alignm identity: 95
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 52, 75

Conread position: 136-409
Cow position:
Alignm length: 281
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 46

Conread position: 138-392
Cow position:
Alignm length: 255
Alignm identity: 171
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 47, 0

Conread position: 138-392
Cow position:
Alignm length: 255
Alignm identity: 172
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 47, 0

Conread position: 138-409
Cow position:
Alignm length: 279
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 44

Conread position: 144-429
Cow position:
Alignm length: 288
Alignm identity: 201
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 59, 41

Conread position: 145-408
Cow position:
Alignm length: 275
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 37

Conread position: 154-409
Cow position:
Alignm length: 263
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 28

Conread position: 158-309
Cow position:
Alignm length: 160
Alignm identity: 129
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 56, 24

Conread position: 180-409
Cow position:
Alignm length: 231
Alignm identity: 172
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 205, 8

Conread position: 194-318
Cow position:
Alignm length: 125
Alignm identity: 96
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 198-395
Cow position:
Alignm length: 201
Alignm identity: 150
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 20, 29

Conread position: 198-397
Cow position:
Alignm length: 203
Alignm identity: 152
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 7, 158

Conread position: 198-411
Cow position:
Alignm length: 215
Alignm identity: 156
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 35, 129

Conread position: 210-341
Cow position:
Alignm length: 134
Alignm identity: 108
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 113, 30

Conread position: 212-394
Cow position:
Alignm length: 184
Alignm identity: 141
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 172, 10

Conread position: 238-409
Cow position:
Alignm length: 173
Alignm identity: 138
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 147, 110

Conread position: 239-409
Cow position:
Alignm length: 171
Alignm identity: 139
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 110, 0

Conread position: 408-728
Cow position:
Alignm length: 324
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 109

Show alignments to all cow chromosomes.