Cow genome map
| Conread name: | Ss1.1-rthg26_l18.5 |
| Conread position: | 5-406 |
| Cow position: | chr12:21499856-21500273 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 291 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 38, 201 |
| Conread position: | 11-388 |
| Cow position: | chr12:8982669-8982278 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 40, 191 |
| Conread position: | 11-409 |
| Cow position: | chr12:2542-2966 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 192 |
| Conread position: | 11-409 |
| Cow position: | chr12:6406903-6406481 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 179 |
| Conread position: | 11-409 |
| Cow position: | chr12:8310929-8311348 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 195 |
| Conread position: | 11-409 |
| Cow position: | chr12:11097985-11098410 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 11-409 |
| Cow position: | chr12:21941523-21941931 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 195 |
| Conread position: | 11-409 |
| Cow position: | chr12:42860071-42859660 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 216 |
| Conread position: | 11-414 |
| Cow position: | chr12:1402237-1402663 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 11-414 |
| Cow position: | chr12:8678375-8677950 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 99 |
| Conread position: | 12-409 |
| Cow position: | chr12:37558304-37558723 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 186 |
| Conread position: | 14-409 |
| Cow position: | chr12:25101312-25100894 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 186 |
| Conread position: | 14-409 |
| Cow position: | chr12:32653294-32653711 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 186 |
| Conread position: | 20-365 |
| Cow position: | chr12:1137346-1137706 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 246 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 32, 66 |
| Conread position: | 20-395 |
| Cow position: | chr12:347586-347982 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 272 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 105, 76 |
| Conread position: | 56-409 |
| Cow position: | chr12:27933145-27932778 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 8 |
| Conread position: | 63-390 |
| Cow position: | chr12:26141620-26141962 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-407 |
| Cow position: | chr12:21254849-21254491 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-408 |
| Cow position: | chr12:252249-251891 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 128 |
| Conread position: | 63-408 |
| Cow position: | chr12:3360710-3361070 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr12:14662804-14662466 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 252 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 56, 10 |
| Conread position: | 63-409 |
| Cow position: | chr12:15951453-15951097 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 56, 39 |
| Conread position: | 63-409 |
| Cow position: | chr12:20998313-20997965 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 245 |
| Conread position: | 63-409 |
| Cow position: | chr12:21426500-21426861 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr12:21901753-21902104 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 122 |
| Conread position: | 63-409 |
| Cow position: | chr12:22332428-22332791 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 130 |
| Conread position: | 63-409 |
| Cow position: | chr12:28766210-28765852 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 125 |
| Conread position: | 63-409 |
| Cow position: | chr12:43031576-43031218 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 128 |
| Conread position: | 63-411 |
| Cow position: | chr12:26947174-26946823 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 137 |
| Conread position: | 63-412 |
| Cow position: | chr12:21207501-21207864 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 64-407 |
| Cow position: | chr12:45261422-45261788 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 131 |
| Conread position: | 64-409 |
| Cow position: | chr12:2282354-2282713 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 128 |
| Conread position: | 65-409 |
| Cow position: | chr12:22205938-22205580 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 127 |
| Conread position: | 81-392 |
| Cow position: | chr12:14693469-14693781 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 14 |
| Conread position: | 84-400 |
| Cow position: | chr12:3632427-3632107 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 41, 119 |
| Conread position: | 137-408 |
| Cow position: | chr12:18500941-18501200 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 195-395 |
| Cow position: | chr12:2838901-2838701 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 189, 153 |
| Conread position: | 204-416 |
| Cow position: | chr12:48405233-48405445 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 114, 145 |
| Conread position: | 232-409 |
| Cow position: | chr12:21197948-21198127 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 113, 0 |
Show alignments to all cow chromosomes.