Cow genome map
| Conread name: | Ss1.1-rthg26_l18.5 |
| Conread position: | 11-276 |
| Cow position: | chr13:32544470-32544753 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 73, 51 |
| Conread position: | 11-296 |
| Cow position: | chr13:34868292-34868606 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 48, 193 |
| Conread position: | 11-369 |
| Cow position: | chr13:33928036-33927665 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 188 |
| Conread position: | 11-403 |
| Cow position: | chr13:34692685-34693103 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 195 |
| Conread position: | 11-405 |
| Cow position: | chr13:33336800-33336400 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 175 |
| Conread position: | 11-406 |
| Cow position: | chr13:31612813-31612391 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 11-408 |
| Cow position: | chr13:34326153-34325730 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 80 |
| Conread position: | 11-409 |
| Cow position: | chr13:2908921-2908504 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 67 |
| Conread position: | 11-409 |
| Cow position: | chr13:3654788-3654380 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 305 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 44, 193 |
| Conread position: | 11-409 |
| Cow position: | chr13:4940609-4941034 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 192 |
| Conread position: | 11-409 |
| Cow position: | chr13:15520991-15520569 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 361 |
| Conread position: | 11-409 |
| Cow position: | chr13:15924860-15924438 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 190 |
| Conread position: | 11-409 |
| Cow position: | chr13:30657438-30657030 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 187 |
| Conread position: | 11-409 |
| Cow position: | chr13:31832131-31832546 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 182 |
| Conread position: | 11-409 |
| Cow position: | chr13:32738296-32737876 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 190 |
| Conread position: | 11-409 |
| Cow position: | chr13:34143134-34142712 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 191 |
| Conread position: | 11-409 |
| Cow position: | chr13:34187165-34186739 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 195 |
| Conread position: | 11-409 |
| Cow position: | chr13:54284112-54284516 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 183 |
| Conread position: | 11-412 |
| Cow position: | chr13:1593632-1593206 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 193 |
| Conread position: | 13-409 |
| Cow position: | chr13:20542836-20542429 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 90 |
| Conread position: | 14-395 |
| Cow position: | chr13:19438478-19438866 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 264 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 57, 21 |
| Conread position: | 14-409 |
| Cow position: | chr13:9044036-9044447 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 93 |
| Conread position: | 14-409 |
| Cow position: | chr13:13324283-13324695 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 89 |
| Conread position: | 14-409 |
| Cow position: | chr13:17308006-17308421 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 345 |
| Conread position: | 14-409 |
| Cow position: | chr13:32986521-32986110 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 186 |
| Conread position: | 14-409 |
| Cow position: | chr13:33825202-33824789 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 187 |
| Conread position: | 14-409 |
| Cow position: | chr13:34911840-34911433 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 90 |
| Conread position: | 14-409 |
| Cow position: | chr13:62328056-62327638 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 186 |
| Conread position: | 15-409 |
| Cow position: | chr13:34042838-34042423 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 188 |
| Conread position: | 21-409 |
| Cow position: | chr13:2389260-2388872 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 43 |
| Conread position: | 24-345 |
| Cow position: | chr13:30302604-30302946 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 25, 176 |
| Conread position: | 27-369 |
| Cow position: | chr13:10115081-10114748 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 44, 101 |
| Conread position: | 63-252 |
| Cow position: | chr13:30237761-30237956 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 56, 128 |
| Conread position: | 63-360 |
| Cow position: | chr13:2297213-2296901 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 129 |
| Conread position: | 63-362 |
| Cow position: | chr13:2232245-2232559 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 63, 129 |
| Conread position: | 63-409 |
| Cow position: | chr13:3276743-3277100 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 129 |
| Conread position: | 63-409 |
| Cow position: | chr13:4872662-4873023 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr13:6668538-6668177 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr13:21840609-21840248 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 130 |
| Conread position: | 63-409 |
| Cow position: | chr13:23003930-23003570 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 129 |
| Conread position: | 63-409 |
| Cow position: | chr13:31734495-31734139 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 117 |
| Conread position: | 63-409 |
| Cow position: | chr13:35756826-35757187 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr13:49973268-49973630 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 128 |
| Conread position: | 63-409 |
| Cow position: | chr13:50109049-50109408 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 127 |
| Conread position: | 63-409 |
| Cow position: | chr13:56730696-56730340 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 126 |
| Conread position: | 63-422 |
| Cow position: | chr13:30245148-30244775 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 129 |
| Conread position: | 64-409 |
| Cow position: | chr13:34936729-34937093 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 130 |
| Conread position: | 84-395 |
| Cow position: | chr13:30063740-30064056 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 37, 86 |
| Conread position: | 94-309 |
| Cow position: | chr13:15451868-15451653 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 29, 101 |
| Conread position: | 123-342 |
| Cow position: | chr13:48356954-48357184 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 15, 186 |
| Conread position: | 136-395 |
| Cow position: | chr13:34767607-34767354 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 249, 28 |
| Conread position: | 136-409 |
| Cow position: | chr13:3567451-3567740 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 79, 46 |
| Conread position: | 136-409 |
| Cow position: | chr13:35030216-35030498 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 35, 47 |
| Conread position: | 138-391 |
| Cow position: | chr13:30140667-30140923 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 76, 21 |
| Conread position: | 166-380 |
| Cow position: | chr13:31560888-31561103 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 48, 19 |
| Conread position: | 172-411 |
| Cow position: | chr13:22697078-22697320 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 31, 12 |
| Conread position: | 185-409 |
| Cow position: | chr13:47230265-47230041 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 200, 163 |
| Conread position: | 190-390 |
| Cow position: | chr13:4483529-4483724 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 15, 56 |
| Conread position: | 202-409 |
| Cow position: | chr13:4178914-4178705 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 16, 149 |
| Conread position: | 204-406 |
| Cow position: | chr13:16343474-16343273 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 54, 143 |
| Conread position: | 204-411 |
| Cow position: | chr13:46732479-46732278 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 33, 14 |
| Conread position: | 286-409 |
| Cow position: | chr13:30237941-30238064 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 99, 62 |
Show alignments to all cow chromosomes.