Cow genome map
| Conread name: | Ss1.1-rthg26_l18.5 |
| Conread position: | 4-322 |
| Cow position: | chr14:40170283-40169951 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 8, 97 |
| Conread position: | 11-391 |
| Cow position: | chr14:47589272-47589672 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 38, 196 |
| Conread position: | 11-409 |
| Cow position: | chr14:5528466-5528884 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 186 |
| Conread position: | 11-409 |
| Cow position: | chr14:11154754-11154343 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 184 |
| Conread position: | 11-409 |
| Cow position: | chr14:13660588-13660170 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 190 |
| Conread position: | 11-409 |
| Cow position: | chr14:19328867-19328446 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 11-409 |
| Cow position: | chr14:23690825-23690407 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 191 |
| Conread position: | 11-409 |
| Cow position: | chr14:36967658-36968077 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 53 |
| Conread position: | 11-409 |
| Cow position: | chr14:37223301-37223724 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 192 |
| Conread position: | 11-409 |
| Cow position: | chr14:40339109-40339504 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 185 |
| Conread position: | 11-409 |
| Cow position: | chr14:42151723-42152145 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 190 |
| Conread position: | 11-409 |
| Cow position: | chr14:45712576-45712164 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 190 |
| Conread position: | 11-409 |
| Cow position: | chr14:45850627-45851044 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 191 |
| Conread position: | 11-409 |
| Cow position: | chr14:46084024-46084439 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 105 |
| Conread position: | 11-411 |
| Cow position: | chr14:20781855-20782280 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 192 |
| Conread position: | 11-411 |
| Cow position: | chr14:43034478-43034065 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 287 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 44, 188 |
| Conread position: | 11-414 |
| Cow position: | chr14:28994456-28994028 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 14-406 |
| Cow position: | chr14:45833566-45833973 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 297 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 29, 95 |
| Conread position: | 14-406 |
| Cow position: | chr14:47623971-47624379 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 189 |
| Conread position: | 14-409 |
| Cow position: | chr14:29048496-29048081 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 185 |
| Conread position: | 14-409 |
| Cow position: | chr14:44130329-44130735 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 180 |
| Conread position: | 14-409 |
| Cow position: | chr14:44225816-44226219 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 29 |
| Conread position: | 15-405 |
| Cow position: | chr14:45767409-45767820 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 188 |
| Conread position: | 15-409 |
| Cow position: | chr14:22032279-22031865 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 184 |
| Conread position: | 19-395 |
| Cow position: | chr14:14309657-14309268 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 178 |
| Conread position: | 19-401 |
| Cow position: | chr14:35928588-35928992 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 285 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 33, 194 |
| Conread position: | 31-405 |
| Cow position: | chr14:38816778-38816388 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 254 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 18, 149 |
| Conread position: | 48-391 |
| Cow position: | chr14:44376886-44377240 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 14 |
| Conread position: | 49-405 |
| Cow position: | chr14:50110032-50110384 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 17 |
| Conread position: | 49-409 |
| Cow position: | chr14:7471827-7472196 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 15 |
| Conread position: | 49-409 |
| Cow position: | chr14:41755312-41755666 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 262 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 69, 15 |
| Conread position: | 49-409 |
| Cow position: | chr14:46464519-46464895 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 21 |
| Conread position: | 56-409 |
| Cow position: | chr14:13302487-13302850 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 8 |
| Conread position: | 58-409 |
| Cow position: | chr14:23256817-23257181 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 7 |
| Conread position: | 58-409 |
| Cow position: | chr14:48254854-48254493 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 134 |
| Conread position: | 63-354 |
| Cow position: | chr14:11468061-11468351 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 93, 66 |
| Conread position: | 63-367 |
| Cow position: | chr14:13272720-13273031 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr14:750031-750392 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr14:2283801-2284161 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 189 |
| Conread position: | 63-409 |
| Cow position: | chr14:9045027-9045388 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr14:15277116-15276758 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 127 |
| Conread position: | 63-409 |
| Cow position: | chr14:16273834-16273473 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr14:16920220-16919868 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 10 |
| Conread position: | 63-409 |
| Cow position: | chr14:17491995-17491634 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr14:17684857-17685218 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 129 |
| Conread position: | 63-409 |
| Cow position: | chr14:23901339-23900978 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr14:30585474-30585129 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 13 |
| Conread position: | 63-409 |
| Cow position: | chr14:33394314-33393954 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 124 |
| Conread position: | 63-409 |
| Cow position: | chr14:35387668-35387327 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 130 |
| Conread position: | 63-409 |
| Cow position: | chr14:38532833-38532470 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 129 |
| Conread position: | 63-409 |
| Cow position: | chr14:44422019-44422376 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 42 |
| Conread position: | 63-409 |
| Cow position: | chr14:44685510-44685865 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 253 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr14:44855963-44855605 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 127 |
| Conread position: | 63-409 |
| Cow position: | chr14:45029651-45029301 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 126 |
| Conread position: | 63-409 |
| Cow position: | chr14:45303900-45303542 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 129 |
| Conread position: | 63-409 |
| Cow position: | chr14:45672583-45672223 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 129 |
| Conread position: | 63-409 |
| Cow position: | chr14:50134534-50134896 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 105 |
| Conread position: | 63-422 |
| Cow position: | chr14:45079996-45080354 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 72 |
| Conread position: | 64-212 |
| Cow position: | chr14:48824079-48824233 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 125 |
| Conread position: | 64-395 |
| Cow position: | chr14:17001592-17001246 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 128 |
| Conread position: | 64-409 |
| Cow position: | chr14:45205533-45205900 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 259 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 48, 137 |
| Conread position: | 64-414 |
| Cow position: | chr14:7831075-7830714 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 126 |
| Conread position: | 66-406 |
| Cow position: | chr14:23260465-23260104 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 54, 127 |
| Conread position: | 81-403 |
| Cow position: | chr14:31887158-31887486 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 44, 112 |
| Conread position: | 81-409 |
| Cow position: | chr14:22018884-22019215 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 108 |
| Conread position: | 91-409 |
| Cow position: | chr14:13778456-13778777 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 27, 101 |
| Conread position: | 116-392 |
| Cow position: | chr14:37414363-37414081 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 23 |
| Conread position: | 135-409 |
| Cow position: | chr14:22242429-22242703 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 68, 19 |
| Conread position: | 136-403 |
| Cow position: | chr14:41407366-41407637 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 78, 46 |
| Conread position: | 136-409 |
| Cow position: | chr14:13864539-13864260 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 46 |
| Conread position: | 136-409 |
| Cow position: | chr14:41085238-41084963 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 46 |
| Conread position: | 139-409 |
| Cow position: | chr14:45916964-45917240 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 31 |
| Conread position: | 149-405 |
| Cow position: | chr14:13480170-13479916 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 33 |
| Conread position: | 168-379 |
| Cow position: | chr14:34925131-34925342 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 171-380 |
| Cow position: | chr14:48406105-48405896 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 175-409 |
| Cow position: | chr14:19619809-19620042 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 33, 7 |
| Conread position: | 177-409 |
| Cow position: | chr14:5511414-5511644 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 208, 33 |
| Conread position: | 184-391 |
| Cow position: | chr14:42123598-42123396 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 93, 57 |
| Conread position: | 198-392 |
| Cow position: | chr14:34775142-34775334 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 90, 39 |
| Conread position: | 204-409 |
| Cow position: | chr14:44287633-44287428 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 181, 144 |
| Conread position: | 204-409 |
| Cow position: | chr14:44551502-44551704 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 27, 23 |
| Conread position: | 228-393 |
| Cow position: | chr14:42198233-42198395 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 157, 76 |
| Conread position: | 258-409 |
| Cow position: | chr14:45771103-45770957 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 127, 20 |
| Conread position: | 275-409 |
| Cow position: | chr14:45160786-45160919 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 110, 53 |
Show alignments to all cow chromosomes.