Cow genome map
| Conread name: | Ss1.1-rthg26_l18.5 |
| Conread position: | 3-409 |
| Cow position: | chr16:39820685-39821106 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 14 |
| Conread position: | 6-409 |
| Cow position: | chr16:23982360-23982787 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 189 |
| Conread position: | 7-409 |
| Cow position: | chr16:20255262-20254835 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 196 |
| Conread position: | 7-409 |
| Cow position: | chr16:26662799-26663225 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 194 |
| Conread position: | 7-409 |
| Cow position: | chr16:31592858-31592428 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 201 |
| Conread position: | 10-297 |
| Cow position: | chr16:25152829-25153127 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 37, 193 |
| Conread position: | 11-254 |
| Cow position: | chr16:24881633-24881369 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 27 |
| Conread position: | 11-309 |
| Cow position: | chr16:29676252-29675934 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 239 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 38, 179 |
| Conread position: | 11-332 |
| Cow position: | chr16:1430281-1430622 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 329 |
| Conread position: | 11-379 |
| Cow position: | chr16:11052226-11052607 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 184 |
| Conread position: | 11-394 |
| Cow position: | chr16:25157163-25156763 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 188 |
| Conread position: | 11-406 |
| Cow position: | chr16:2728259-2727814 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 203 |
| Conread position: | 11-407 |
| Cow position: | chr16:10808220-10808624 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 181 |
| Conread position: | 11-409 |
| Cow position: | chr16:407978-407555 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 163 |
| Conread position: | 11-409 |
| Cow position: | chr16:2411916-2411493 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 190 |
| Conread position: | 11-409 |
| Cow position: | chr16:2484083-2483666 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 77 |
| Conread position: | 11-409 |
| Cow position: | chr16:8817051-8816628 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 191 |
| Conread position: | 11-409 |
| Cow position: | chr16:10437311-10437719 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 133 |
| Conread position: | 11-409 |
| Cow position: | chr16:12538871-12538448 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 192 |
| Conread position: | 11-409 |
| Cow position: | chr16:15565804-15566221 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 166 |
| Conread position: | 11-409 |
| Cow position: | chr16:23253450-23253031 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 190 |
| Conread position: | 11-409 |
| Cow position: | chr16:25341025-25341441 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 188 |
| Conread position: | 11-409 |
| Cow position: | chr16:25440673-25441094 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 32 |
| Conread position: | 11-409 |
| Cow position: | chr16:25458416-25457995 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 32 |
| Conread position: | 11-409 |
| Cow position: | chr16:36362294-36361886 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 145 |
| Conread position: | 11-409 |
| Cow position: | chr16:42740368-42739947 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 90 |
| Conread position: | 11-409 |
| Cow position: | chr16:56551182-56551596 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 189 |
| Conread position: | 11-414 |
| Cow position: | chr16:27734751-27734322 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 32 |
| Conread position: | 14-409 |
| Cow position: | chr16:15183863-15184279 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 185 |
| Conread position: | 15-409 |
| Cow position: | chr16:49257510-49257107 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 63 |
| Conread position: | 17-295 |
| Cow position: | chr16:52815565-52815275 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 32, 186 |
| Conread position: | 19-409 |
| Cow position: | chr16:9929618-9930016 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 171 |
| Conread position: | 20-362 |
| Cow position: | chr16:54647389-54647748 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 32, 186 |
| Conread position: | 22-411 |
| Cow position: | chr16:51685508-51685915 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 61, 255 |
| Conread position: | 23-409 |
| Cow position: | chr16:42051289-42050911 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 21 |
| Conread position: | 48-395 |
| Cow position: | chr16:11111833-11111480 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 73, 14 |
| Conread position: | 49-392 |
| Cow position: | chr16:41559773-41560117 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 22, 48 |
| Conread position: | 49-409 |
| Cow position: | chr16:15491813-15492185 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 15 |
| Conread position: | 63-335 |
| Cow position: | chr16:32605944-32606231 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-367 |
| Cow position: | chr16:16276388-16276074 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 127 |
| Conread position: | 63-380 |
| Cow position: | chr16:4303354-4303031 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 128 |
| Conread position: | 63-394 |
| Cow position: | chr16:26650551-26650889 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 60, 22 |
| Conread position: | 63-395 |
| Cow position: | chr16:40887138-40886798 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 126 |
| Conread position: | 63-409 |
| Cow position: | chr16:31864-32214 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 129 |
| Conread position: | 63-409 |
| Cow position: | chr16:335415-335767 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 125 |
| Conread position: | 63-409 |
| Cow position: | chr16:836146-836505 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 10 |
| Conread position: | 63-409 |
| Cow position: | chr16:1568337-1567978 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 127 |
| Conread position: | 63-409 |
| Cow position: | chr16:5660977-5661326 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 99 |
| Conread position: | 63-409 |
| Cow position: | chr16:5918601-5918959 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 128 |
| Conread position: | 63-409 |
| Cow position: | chr16:6549405-6549048 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 127 |
| Conread position: | 63-409 |
| Cow position: | chr16:6942739-6943108 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr16:7905759-7906095 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 130 |
| Conread position: | 63-409 |
| Cow position: | chr16:10204297-10203954 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 125 |
| Conread position: | 63-409 |
| Cow position: | chr16:14666714-14666353 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 129 |
| Conread position: | 63-409 |
| Cow position: | chr16:25084739-25085097 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 127 |
| Conread position: | 63-409 |
| Cow position: | chr16:25187758-25188118 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr16:28171242-28170887 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 42 |
| Conread position: | 63-409 |
| Cow position: | chr16:28471979-28471625 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 61, 128 |
| Conread position: | 63-409 |
| Cow position: | chr16:29046137-29046498 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 129 |
| Conread position: | 63-409 |
| Cow position: | chr16:34529442-34529797 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 126 |
| Conread position: | 63-409 |
| Cow position: | chr16:36282517-36282873 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 128 |
| Conread position: | 63-409 |
| Cow position: | chr16:40297059-40296702 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 129 |
| Conread position: | 63-411 |
| Cow position: | chr16:36232489-36232137 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 91 |
| Conread position: | 64-409 |
| Cow position: | chr16:5483439-5483799 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 128 |
| Conread position: | 64-409 |
| Cow position: | chr16:43898151-43897792 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 128 |
| Conread position: | 66-411 |
| Cow position: | chr16:28438665-28438309 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 58, 129 |
| Conread position: | 67-323 |
| Cow position: | chr16:18687999-18687735 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 61, 125 |
| Conread position: | 73-409 |
| Cow position: | chr16:2239607-2239256 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 87 |
| Conread position: | 76-242 |
| Cow position: | chr16:4442003-4442179 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 50, 116 |
| Conread position: | 132-308 |
| Cow position: | chr16:29032354-29032534 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 82, 50 |
| Conread position: | 132-409 |
| Cow position: | chr16:32935352-32935651 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 7, 55 |
| Conread position: | 136-392 |
| Cow position: | chr16:16029986-16030245 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 71, 60 |
| Conread position: | 173-424 |
| Cow position: | chr16:33611844-33611594 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 20 |
| Conread position: | 184-409 |
| Cow position: | chr16:19713639-19713413 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 181 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 28, 118 |
| Conread position: | 185-411 |
| Cow position: | chr16:44966423-44966646 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 16, 27 |
| Conread position: | 204-409 |
| Cow position: | chr16:9777357-9777561 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 142, 53 |
| Conread position: | 231-407 |
| Cow position: | chr16:49235848-49235677 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 161, 27 |
| Conread position: | 234-409 |
| Cow position: | chr16:53045654-53045830 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 58, 106 |
| Conread position: | 246-411 |
| Cow position: | chr16:41758134-41757970 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 139, 93 |
| Conread position: | 265-409 |
| Cow position: | chr16:18500015-18499875 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 120, 33 |
Show alignments to all cow chromosomes.