Cow genome map
| Conread name: | Ss1.1-rthg26_l18.5 |
| Conread position: | 5-409 |
| Cow position: | chr17:3643212-3642782 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 198 |
| Conread position: | 6-409 |
| Cow position: | chr17:1946600-1947024 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 200 |
| Conread position: | 7-406 |
| Cow position: | chr17:20183600-20183180 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 193 |
| Conread position: | 11-213 |
| Cow position: | chr17:2579191-2579410 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 32, 102 |
| Conread position: | 11-232 |
| Cow position: | chr17:40804029-40804270 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 45, 189 |
| Conread position: | 11-332 |
| Cow position: | chr17:15322461-15322786 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 139 |
| Conread position: | 11-407 |
| Cow position: | chr17:22429852-22429442 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 192 |
| Conread position: | 11-409 |
| Cow position: | chr17:249552-249993 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 11-409 |
| Cow position: | chr17:1879722-1880148 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 192 |
| Conread position: | 11-409 |
| Cow position: | chr17:15143733-15143313 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 186 |
| Conread position: | 11-409 |
| Cow position: | chr17:16889755-16890178 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 190 |
| Conread position: | 11-409 |
| Cow position: | chr17:18104050-18103626 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 11-409 |
| Cow position: | chr17:18185894-18185479 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 176 |
| Conread position: | 11-409 |
| Cow position: | chr17:19269734-19269312 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 190 |
| Conread position: | 11-409 |
| Cow position: | chr17:23857402-23856980 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 188 |
| Conread position: | 11-409 |
| Cow position: | chr17:27345435-27345853 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 191 |
| Conread position: | 11-409 |
| Cow position: | chr17:35591845-35592267 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 192 |
| Conread position: | 11-411 |
| Cow position: | chr17:13929298-13929724 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 192 |
| Conread position: | 11-414 |
| Cow position: | chr17:11088091-11087666 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 189 |
| Conread position: | 14-397 |
| Cow position: | chr17:152834-152430 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 161 |
| Conread position: | 14-409 |
| Cow position: | chr17:9653816-9653402 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 182 |
| Conread position: | 14-410 |
| Cow position: | chr17:4081286-4081687 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 85 |
| Conread position: | 14-412 |
| Cow position: | chr17:8208743-8209163 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 186 |
| Conread position: | 15-412 |
| Cow position: | chr17:14325859-14325450 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 185 |
| Conread position: | 20-409 |
| Cow position: | chr17:4286735-4287137 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 176 |
| Conread position: | 22-326 |
| Cow position: | chr17:18301992-18301699 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 102, 42 |
| Conread position: | 23-392 |
| Cow position: | chr17:4295020-4295382 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 100, 151 |
| Conread position: | 44-199 |
| Cow position: | chr17:2738055-2738216 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 46-409 |
| Cow position: | chr17:42264195-42264558 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 75 |
| Conread position: | 48-409 |
| Cow position: | chr17:39933364-39933709 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 70, 14 |
| Conread position: | 63-256 |
| Cow position: | chr17:15370770-15370973 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 56, 107 |
| Conread position: | 63-270 |
| Cow position: | chr17:28109779-28110002 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 56, 126 |
| Conread position: | 63-372 |
| Cow position: | chr17:16859863-16859540 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 129 |
| Conread position: | 63-381 |
| Cow position: | chr17:22160609-22160941 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-394 |
| Cow position: | chr17:2173572-2173917 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 130 |
| Conread position: | 63-395 |
| Cow position: | chr17:14308609-14308273 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 57, 91 |
| Conread position: | 63-409 |
| Cow position: | chr17:228608-228254 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 128 |
| Conread position: | 63-409 |
| Cow position: | chr17:1383121-1382760 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr17:2248888-2248530 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 128 |
| Conread position: | 63-409 |
| Cow position: | chr17:2261803-2262160 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 99 |
| Conread position: | 63-409 |
| Cow position: | chr17:4059801-4060154 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 63-409 |
| Cow position: | chr17:6089468-6089107 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr17:6259538-6259899 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 134 |
| Conread position: | 63-409 |
| Cow position: | chr17:14217331-14216969 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 129 |
| Conread position: | 63-409 |
| Cow position: | chr17:14893854-14894207 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 129 |
| Conread position: | 63-409 |
| Cow position: | chr17:15157268-15156910 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 127 |
| Conread position: | 63-409 |
| Cow position: | chr17:15850091-15850450 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 131 |
| Conread position: | 63-409 |
| Cow position: | chr17:20088037-20087690 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 103 |
| Conread position: | 63-409 |
| Cow position: | chr17:20666033-20665672 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr17:22131927-22132282 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 126 |
| Conread position: | 63-409 |
| Cow position: | chr17:23324748-23324400 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 69 |
| Conread position: | 63-409 |
| Cow position: | chr17:24633650-24634008 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 26 |
| Conread position: | 63-409 |
| Cow position: | chr17:25737356-25737717 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr17:43988228-43988587 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-422 |
| Cow position: | chr17:24780741-24781114 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 129 |
| Conread position: | 64-409 |
| Cow position: | chr17:2287083-2287440 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 95 |
| Conread position: | 65-409 |
| Cow position: | chr17:15435486-15435845 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 127 |
| Conread position: | 66-409 |
| Cow position: | chr17:44853239-44852878 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 252 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 25, 125 |
| Conread position: | 74-412 |
| Cow position: | chr17:2588036-2588363 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 245 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 140, 9 |
| Conread position: | 78-383 |
| Cow position: | chr17:20401392-20401700 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 43, 20 |
| Conread position: | 84-409 |
| Cow position: | chr17:13857055-13856715 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 108 |
| Conread position: | 106-409 |
| Cow position: | chr17:2555860-2556176 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 85 |
| Conread position: | 136-383 |
| Cow position: | chr17:12670671-12670427 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 136-409 |
| Cow position: | chr17:18026981-18026703 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 49 |
| Conread position: | 186-411 |
| Cow position: | chr17:2579457-2579681 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 199, 38 |
| Conread position: | 203-394 |
| Cow position: | chr17:31199795-31199611 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 20, 109 |
| Conread position: | 211-411 |
| Cow position: | chr17:18325135-18324936 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 144, 35 |
| Conread position: | 228-409 |
| Cow position: | chr17:40804689-40804870 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 157, 120 |
Show alignments to all cow chromosomes.