Cow genome map
| Conread name: | Ss1.1-rthg26_l18.5 |
| Conread position: | 9-365 |
| Cow position: | chr18:29070098-29070461 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 56 |
| Conread position: | 9-409 |
| Cow position: | chr18:16078539-16078979 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 379 |
| Conread position: | 11-309 |
| Cow position: | chr18:17992723-17992403 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 36, 169 |
| Conread position: | 11-405 |
| Cow position: | chr18:33358706-33359122 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 191 |
| Conread position: | 11-406 |
| Cow position: | chr18:39748420-39748837 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 186 |
| Conread position: | 11-407 |
| Cow position: | chr18:27838465-27838056 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 121 |
| Conread position: | 11-407 |
| Cow position: | chr18:53785679-53786099 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 188 |
| Conread position: | 11-408 |
| Cow position: | chr18:2019845-2019424 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 189 |
| Conread position: | 11-409 |
| Cow position: | chr18:6869417-6868997 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 190 |
| Conread position: | 11-409 |
| Cow position: | chr18:14415817-14416238 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 189 |
| Conread position: | 11-409 |
| Cow position: | chr18:16176768-16176352 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 183 |
| Conread position: | 11-409 |
| Cow position: | chr18:33335709-33336124 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 68 |
| Conread position: | 11-409 |
| Cow position: | chr18:36508171-36508594 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 11-409 |
| Cow position: | chr18:37504903-37505326 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 190 |
| Conread position: | 11-409 |
| Cow position: | chr18:40478221-40478645 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 196 |
| Conread position: | 11-409 |
| Cow position: | chr18:41840987-41840563 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 11-409 |
| Cow position: | chr18:43147086-43146664 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 190 |
| Conread position: | 11-409 |
| Cow position: | chr18:47719727-47719322 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 103 |
| Conread position: | 11-409 |
| Cow position: | chr18:51257821-51258245 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 119 |
| Conread position: | 11-409 |
| Cow position: | chr18:51310421-51310847 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 189 |
| Conread position: | 11-409 |
| Cow position: | chr18:51480678-51481101 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 190 |
| Conread position: | 14-409 |
| Cow position: | chr18:11275259-11274844 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 50 |
| Conread position: | 14-409 |
| Cow position: | chr18:23944530-23944113 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 357 |
| Conread position: | 14-409 |
| Cow position: | chr18:28974059-28973641 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 189 |
| Conread position: | 15-409 |
| Cow position: | chr18:35335331-35335741 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 123 |
| Conread position: | 19-409 |
| Cow position: | chr18:16533830-16534240 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 63-200 |
| Cow position: | chr18:22869656-22869801 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 56, 128 |
| Conread position: | 63-212 |
| Cow position: | chr18:51660318-51660476 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 56, 128 |
| Conread position: | 63-264 |
| Cow position: | chr18:27986929-27987144 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 55, 128 |
| Conread position: | 63-305 |
| Cow position: | chr18:44621660-44621917 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 56, 111 |
| Conread position: | 63-306 |
| Cow position: | chr18:16660103-16659846 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 56, 128 |
| Conread position: | 63-370 |
| Cow position: | chr18:54044800-54044485 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 127 |
| Conread position: | 63-405 |
| Cow position: | chr18:33268742-33269083 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 128 |
| Conread position: | 63-409 |
| Cow position: | chr18:19352287-19352647 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 128 |
| Conread position: | 63-409 |
| Cow position: | chr18:22602388-22602749 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr18:23797552-23797909 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 63-409 |
| Cow position: | chr18:29236719-29237070 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 33 |
| Conread position: | 63-409 |
| Cow position: | chr18:32293676-32294026 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 104 |
| Conread position: | 63-409 |
| Cow position: | chr18:33953666-33953307 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 128 |
| Conread position: | 63-409 |
| Cow position: | chr18:37599626-37599280 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 125 |
| Conread position: | 63-409 |
| Cow position: | chr18:47741919-47742280 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr18:48221778-48222141 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr18:51341587-51341948 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr18:51689527-51689886 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr18:54171942-54171598 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 127 |
| Conread position: | 63-409 |
| Cow position: | chr18:55089024-55088663 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 64-324 |
| Cow position: | chr18:35288434-35288715 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 64-372 |
| Cow position: | chr18:1521033-1521352 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 130 |
| Conread position: | 64-395 |
| Cow position: | chr18:43200965-43201302 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 125 |
| Conread position: | 64-411 |
| Cow position: | chr18:44601440-44601784 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 8 |
| Conread position: | 64-414 |
| Cow position: | chr18:2887119-2886756 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 131 |
| Conread position: | 78-395 |
| Cow position: | chr18:29946109-29946430 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 92-409 |
| Cow position: | chr18:54024420-54024098 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 35 |
| Conread position: | 132-409 |
| Cow position: | chr18:14130369-14130646 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 49 |
| Conread position: | 132-409 |
| Cow position: | chr18:52650911-52651181 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 50 |
| Conread position: | 136-409 |
| Cow position: | chr18:114378-114651 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 49 |
| Conread position: | 161-425 |
| Cow position: | chr18:25350673-25350943 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 51, 21 |
| Conread position: | 164-409 |
| Cow position: | chr18:24040721-24040471 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 189 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 170-409 |
| Cow position: | chr18:51463057-51462817 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 44, 12 |
| Conread position: | 175-409 |
| Cow position: | chr18:19539557-19539318 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 39, 7 |
| Conread position: | 204-409 |
| Cow position: | chr18:32652277-32652481 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 181, 28 |
| Conread position: | 215-409 |
| Cow position: | chr18:16843268-16843076 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 170, 67 |
| Conread position: | 229-409 |
| Cow position: | chr18:18089391-18089211 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 154, 119 |
| Conread position: | 248-409 |
| Cow position: | chr18:54003618-54003787 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 91, 26 |
| Conread position: | 272-409 |
| Cow position: | chr18:27987185-27987322 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 113, 76 |
| Conread position: | 295-409 |
| Cow position: | chr18:17992273-17992159 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 90, 54 |
Show alignments to all cow chromosomes.