Cow genome map
| Conread name: | Ss1.1-rthg26_l18.5 |
| Conread position: | 1-368 |
| Cow position: | chr19:34257-34640 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 34 |
| Conread position: | 3-409 |
| Cow position: | chr19:40887809-40887390 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 170 |
| Conread position: | 7-409 |
| Cow position: | chr19:39546465-39546889 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 197 |
| Conread position: | 9-289 |
| Cow position: | chr19:27052923-27052623 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 188 |
| Conread position: | 11-210 |
| Cow position: | chr19:4252515-4252298 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 36, 190 |
| Conread position: | 11-269 |
| Cow position: | chr19:28376373-28376644 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 38, 182 |
| Conread position: | 11-272 |
| Cow position: | chr19:4532901-4532625 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 32, 186 |
| Conread position: | 11-361 |
| Cow position: | chr19:55078588-55078963 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 11-373 |
| Cow position: | chr19:20125466-20125837 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 190 |
| Conread position: | 11-406 |
| Cow position: | chr19:7488155-7488576 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 192 |
| Conread position: | 11-407 |
| Cow position: | chr19:416495-416925 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 192 |
| Conread position: | 11-409 |
| Cow position: | chr19:893761-893349 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 64 |
| Conread position: | 11-409 |
| Cow position: | chr19:10672464-10672040 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 11-409 |
| Cow position: | chr19:33941454-33941876 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 192 |
| Conread position: | 11-409 |
| Cow position: | chr19:39688386-39688793 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 121 |
| Conread position: | 14-406 |
| Cow position: | chr19:43143564-43143979 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 186 |
| Conread position: | 14-409 |
| Cow position: | chr19:37745-38161 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 185 |
| Conread position: | 14-409 |
| Cow position: | chr19:76391-76003 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 119 |
| Conread position: | 14-409 |
| Cow position: | chr19:172056-172477 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 14-414 |
| Cow position: | chr19:32223583-32223178 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 51 |
| Conread position: | 15-409 |
| Cow position: | chr19:32665379-32665791 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 51 |
| Conread position: | 15-412 |
| Cow position: | chr19:378026-377638 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 34, 95 |
| Conread position: | 19-409 |
| Cow position: | chr19:39390371-39390774 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 183 |
| Conread position: | 20-367 |
| Cow position: | chr19:15953713-15954071 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 252 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 27, 178 |
| Conread position: | 21-405 |
| Cow position: | chr19:1031961-1032337 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 114 |
| Conread position: | 46-379 |
| Cow position: | chr19:7450113-7449789 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 46-409 |
| Cow position: | chr19:439755-439391 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 264 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 11, 34 |
| Conread position: | 63-275 |
| Cow position: | chr19:32193482-32193711 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 56, 128 |
| Conread position: | 63-305 |
| Cow position: | chr19:29209466-29209721 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 63, 129 |
| Conread position: | 63-381 |
| Cow position: | chr19:30372187-30372511 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 128 |
| Conread position: | 63-388 |
| Cow position: | chr19:7405543-7405231 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 322, 38 |
| Conread position: | 63-393 |
| Cow position: | chr19:28593182-28593527 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 127 |
| Conread position: | 63-405 |
| Cow position: | chr19:31341611-31341984 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 129 |
| Conread position: | 63-407 |
| Cow position: | chr19:350378-350027 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 56, 128 |
| Conread position: | 63-409 |
| Cow position: | chr19:170835-170481 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 127 |
| Conread position: | 63-409 |
| Cow position: | chr19:203868-204227 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 298 |
| Conread position: | 63-409 |
| Cow position: | chr19:772504-772865 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr19:4385390-4385747 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 124 |
| Conread position: | 63-409 |
| Cow position: | chr19:7341973-7342334 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr19:32212165-32211807 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 202 |
| Conread position: | 63-409 |
| Cow position: | chr19:32244589-32244950 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr19:33873332-33873692 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr19:40852525-40852172 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-410 |
| Cow position: | chr19:6553518-6553869 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 138 |
| Conread position: | 64-356 |
| Cow position: | chr19:543719-543414 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 49, 31 |
| Conread position: | 66-406 |
| Cow position: | chr19:28581746-28581396 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 199 |
| Conread position: | 74-315 |
| Cow position: | chr19:548303-548536 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 60, 50 |
| Conread position: | 76-391 |
| Cow position: | chr19:359585-359260 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 45, 5 |
| Conread position: | 76-395 |
| Cow position: | chr19:7068400-7068712 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 11 |
| Conread position: | 102-366 |
| Cow position: | chr19:32237736-32237460 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 203 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 25, 87 |
| Conread position: | 136-409 |
| Cow position: | chr19:42299511-42299230 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 151-412 |
| Cow position: | chr19:261451-261712 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 37, 198 |
| Conread position: | 152-405 |
| Cow position: | chr19:687070-687325 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 157-388 |
| Cow position: | chr19:35376805-35377032 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 228, 9 |
| Conread position: | 165-409 |
| Cow position: | chr19:52151814-52151564 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 27, 17 |
| Conread position: | 166-409 |
| Cow position: | chr19:20104731-20104979 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 29, 16 |
| Conread position: | 180-409 |
| Cow position: | chr19:2274343-2274112 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 34, 170 |
| Conread position: | 200-406 |
| Cow position: | chr19:352936-352730 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 185, 160 |
| Conread position: | 204-395 |
| Cow position: | chr19:42248867-42249056 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 181, 130 |
| Conread position: | 245-409 |
| Cow position: | chr19:42649010-42648846 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 140, 103 |
Show alignments to all cow chromosomes.