Cow genome map

Conread name: Ss1.1-rthg26_l18.5

Conread position: 7-325
Cow position: chr20:21393367-21393703 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 151

Conread position: 11-280
Cow position: chr20:10102747-10102465 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 208
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 36, 190

Conread position: 11-281
Cow position: chr20:4799846-4799556 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 216
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 38, 186

Conread position: 11-368
Cow position: chr20:18315780-18315414 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 264
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 36, 90

Conread position: 11-371
Cow position: chr20:30684138-30684519 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 188

Conread position: 11-395
Cow position: chr20:28160580-28160979 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 191

Conread position: 11-409
Cow position: chr20:3270517-3270927 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 32

Conread position: 11-409
Cow position: chr20:5534741-5535160 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 183

Conread position: 11-409
Cow position: chr20:8313634-8313217 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 188

Conread position: 11-409
Cow position: chr20:12438962-12438538 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 49

Conread position: 11-409
Cow position: chr20:13762705-13763127 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 188

Conread position: 11-409
Cow position: chr20:15064568-15064988 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 192

Conread position: 11-409
Cow position: chr20:15098071-15097654 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 184

Conread position: 11-409
Cow position: chr20:23798681-23799109 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 192

Conread position: 11-409
Cow position: chr20:24614349-24614758 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 179

Conread position: 11-409
Cow position: chr20:25851191-25850768 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 192

Conread position: 11-411
Cow position: chr20:23469861-23469441 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 193

Conread position: 20-408
Cow position: chr20:9954162-9953764 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 17

Conread position: 63-212
Cow position: chr20:19192266-19192108 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 56, 128

Conread position: 63-290
Cow position: chr20:29572325-29572089 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 161
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 61, 131

Conread position: 63-379
Cow position: chr20:11679248-11678918 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-395
Cow position: chr20:22206411-22206745 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 234
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 62, 24

Conread position: 63-403
Cow position: chr20:13665336-13664993 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 239
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 58, 26

Conread position: 63-405
Cow position: chr20:8835767-8835423 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 239
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 46, 38

Conread position: 63-409
Cow position: chr20:822629-822990 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr20:3252271-3251912 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 127

Conread position: 63-409
Cow position: chr20:5484054-5484412 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 130

Conread position: 63-409
Cow position: chr20:5560853-5560492 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr20:7116607-7116246 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 300

Conread position: 63-409
Cow position: chr20:15291880-15292233 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 125

Conread position: 63-409
Cow position: chr20:19437820-19438170 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 120

Conread position: 63-409
Cow position: chr20:21914188-21914551 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr20:27869059-27869420 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr20:29948380-29948722 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 56

Conread position: 63-409
Cow position: chr20:35119436-35119793 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 255
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 55, 125

Conread position: 63-414
Cow position: chr20:28565734-28565369 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 129

Conread position: 66-248
Cow position: chr20:28593613-28593799 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 57, 125

Conread position: 66-409
Cow position: chr20:8004361-8004003 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 127

Conread position: 78-409
Cow position: chr20:15947516-15947157 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 117

Conread position: 93-409
Cow position: chr20:25960995-25961326 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 99

Conread position: 136-409
Cow position: chr20:13680111-13679835 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 46

Conread position: 136-412
Cow position: chr20:3033007-3033287 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 21

Conread position: 156-409
Cow position: chr20:3684520-3684265 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 26

Conread position: 166-380
Cow position: chr20:10841266-10841053 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 148
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 37, 27

Conread position: 197-406
Cow position: chr20:13434940-13434731 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 13, 20

Conread position: 212-411
Cow position: chr20:8993618-8993420 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 141
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 22, 15

Show alignments to all cow chromosomes.