Cow genome map
| Conread name: | Ss1.1-rthg26_l18.5 |
| Conread position: | 6-371 |
| Cow position: | chr21:7267623-7267241 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 190 |
| Conread position: | 7-411 |
| Cow position: | chr21:20744836-20744421 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 85 |
| Conread position: | 8-395 |
| Cow position: | chr21:10849995-10850408 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 195 |
| Conread position: | 9-409 |
| Cow position: | chr21:4456745-4457168 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 191 |
| Conread position: | 11-308 |
| Cow position: | chr21:3615211-3615534 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 12 |
| Conread position: | 11-332 |
| Cow position: | chr21:33251310-33251657 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 192 |
| Conread position: | 11-340 |
| Cow position: | chr21:34259294-34258957 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 184 |
| Conread position: | 11-393 |
| Cow position: | chr21:10566596-10566999 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 165 |
| Conread position: | 11-405 |
| Cow position: | chr21:3426406-3426823 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 188 |
| Conread position: | 11-409 |
| Cow position: | chr21:1292254-1291849 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 240 |
| Conread position: | 11-409 |
| Cow position: | chr21:2416157-2416567 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 157 |
| Conread position: | 11-409 |
| Cow position: | chr21:2883816-2883406 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 51 |
| Conread position: | 11-409 |
| Cow position: | chr21:3778686-3779108 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 48 |
| Conread position: | 11-409 |
| Cow position: | chr21:13124077-13123664 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 178 |
| Conread position: | 11-409 |
| Cow position: | chr21:30599997-30599584 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 69 |
| Conread position: | 11-410 |
| Cow position: | chr21:4076766-4077182 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 182 |
| Conread position: | 11-411 |
| Cow position: | chr21:2501856-2502230 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 278 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 44, 130 |
| Conread position: | 14-303 |
| Cow position: | chr21:26819093-26818785 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 43, 182 |
| Conread position: | 14-409 |
| Cow position: | chr21:2510576-2510993 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 150 |
| Conread position: | 14-409 |
| Cow position: | chr21:2789070-2788650 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 189 |
| Conread position: | 14-409 |
| Cow position: | chr21:4183459-4183860 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 29 |
| Conread position: | 14-410 |
| Cow position: | chr21:35596290-35596711 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 188 |
| Conread position: | 20-409 |
| Cow position: | chr21:23811814-23812217 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 45 |
| Conread position: | 22-181 |
| Cow position: | chr21:27683-27852 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 32-395 |
| Cow position: | chr21:25992680-25992291 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 185 |
| Conread position: | 49-409 |
| Cow position: | chr21:31559685-31559314 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 23 |
| Conread position: | 58-409 |
| Cow position: | chr21:2541439-2541070 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 135 |
| Conread position: | 63-200 |
| Cow position: | chr21:17572902-17573047 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 56, 128 |
| Conread position: | 63-267 |
| Cow position: | chr21:27708743-27708963 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 63-321 |
| Cow position: | chr21:2716700-2716428 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 127 |
| Conread position: | 63-375 |
| Cow position: | chr21:2674646-2674319 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 46, 67 |
| Conread position: | 63-381 |
| Cow position: | chr21:11505568-11505900 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 129 |
| Conread position: | 63-393 |
| Cow position: | chr21:2476529-2476201 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 108 |
| Conread position: | 63-395 |
| Cow position: | chr21:33755289-33755629 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 126 |
| Conread position: | 63-395 |
| Cow position: | chr21:36714613-36714958 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 28, 132 |
| Conread position: | 63-409 |
| Cow position: | chr21:145900-146264 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 304 |
| Conread position: | 63-409 |
| Cow position: | chr21:358998-359375 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 270 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 62, 128 |
| Conread position: | 63-409 |
| Cow position: | chr21:2530145-2529786 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 42 |
| Conread position: | 63-409 |
| Cow position: | chr21:4090632-4090991 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 127 |
| Conread position: | 63-409 |
| Cow position: | chr21:4222706-4222351 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 129 |
| Conread position: | 63-409 |
| Cow position: | chr21:4590009-4589649 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 127 |
| Conread position: | 63-409 |
| Cow position: | chr21:9891584-9891945 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 120 |
| Conread position: | 63-409 |
| Cow position: | chr21:11453675-11453314 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 291 |
| Conread position: | 63-409 |
| Cow position: | chr21:12056019-12055659 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 290 |
| Conread position: | 63-409 |
| Cow position: | chr21:26638482-26638123 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 127 |
| Conread position: | 63-409 |
| Cow position: | chr21:37044894-37045252 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 128 |
| Conread position: | 63-409 |
| Cow position: | chr21:46915568-46915930 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 130 |
| Conread position: | 63-409 |
| Cow position: | chr21:47948090-47948450 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 129 |
| Conread position: | 63-411 |
| Cow position: | chr21:993035-992685 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 47, 105 |
| Conread position: | 63-412 |
| Cow position: | chr21:39425044-39425408 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-414 |
| Cow position: | chr21:30561783-30562148 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 64-363 |
| Cow position: | chr21:2769479-2769166 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 129 |
| Conread position: | 64-409 |
| Cow position: | chr21:48116089-48116443 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 130 |
| Conread position: | 65-409 |
| Cow position: | chr21:34293001-34293358 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 126 |
| Conread position: | 73-409 |
| Cow position: | chr21:47939472-47939813 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 38, 286 |
| Conread position: | 76-409 |
| Cow position: | chr21:6339560-6339908 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 116 |
| Conread position: | 76-540 |
| Cow position: | chr21:8678366-8677888 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 116 |
| Conread position: | 129-405 |
| Cow position: | chr21:3194451-3194715 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 256, 59 |
| Conread position: | 132-409 |
| Cow position: | chr21:40271617-40271335 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 50 |
| Conread position: | 137-397 |
| Cow position: | chr21:21926637-21926379 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 36, 50 |
| Conread position: | 141-393 |
| Cow position: | chr21:26823161-26822906 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 146-409 |
| Cow position: | chr21:3798295-3798029 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 23 |
| Conread position: | 166-412 |
| Cow position: | chr21:30165384-30165137 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 70, 19 |
| Conread position: | 168-412 |
| Cow position: | chr21:4982390-4982634 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 190, 17 |
| Conread position: | 172-411 |
| Cow position: | chr21:4086908-4087146 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 91, 21 |
| Conread position: | 175-409 |
| Cow position: | chr21:18820313-18820086 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 210, 7 |
| Conread position: | 199-409 |
| Cow position: | chr21:1191295-1191505 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 182, 149 |
Show alignments to all cow chromosomes.