Cow genome map
| Conread name: | Ss1.1-rthg26_l18.5 |
| Conread position: | 7-409 |
| Cow position: | chr22:44609354-44609761 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 17 |
| Conread position: | 8-395 |
| Cow position: | chr22:33350912-33351323 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 291 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 41, 326 |
| Conread position: | 10-409 |
| Cow position: | chr22:1321358-1321764 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 190 |
| Conread position: | 10-409 |
| Cow position: | chr22:19143955-19143530 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 193 |
| Conread position: | 11-365 |
| Cow position: | chr22:3306981-3306620 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 266 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 35, 176 |
| Conread position: | 11-380 |
| Cow position: | chr22:27386686-27386292 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 11-406 |
| Cow position: | chr22:31335287-31334869 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 191 |
| Conread position: | 11-407 |
| Cow position: | chr22:1270753-1270368 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 54 |
| Conread position: | 11-409 |
| Cow position: | chr22:1319141-1319566 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 193 |
| Conread position: | 11-409 |
| Cow position: | chr22:15851084-15851493 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 187 |
| Conread position: | 11-409 |
| Cow position: | chr22:17328994-17328570 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 11-409 |
| Cow position: | chr22:31313090-31313510 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 188 |
| Conread position: | 11-409 |
| Cow position: | chr22:34168077-34168501 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 11-409 |
| Cow position: | chr22:36736515-36736928 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 185 |
| Conread position: | 11-409 |
| Cow position: | chr22:36861785-36861361 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 192 |
| Conread position: | 11-409 |
| Cow position: | chr22:37073422-37073044 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 32 |
| Conread position: | 11-409 |
| Cow position: | chr22:39469772-39469354 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 190 |
| Conread position: | 11-409 |
| Cow position: | chr22:42990917-42991341 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 192 |
| Conread position: | 11-409 |
| Cow position: | chr22:44933725-44934148 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 192 |
| Conread position: | 11-409 |
| Cow position: | chr22:46853096-46853510 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 23 |
| Conread position: | 11-411 |
| Cow position: | chr22:41419938-41419523 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 116 |
| Conread position: | 14-393 |
| Cow position: | chr22:44369869-44369471 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 45, 184 |
| Conread position: | 14-409 |
| Cow position: | chr22:118067-117673 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 189 |
| Conread position: | 14-409 |
| Cow position: | chr22:32485584-32485184 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 120 |
| Conread position: | 15-409 |
| Cow position: | chr22:10546400-10546814 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 182 |
| Conread position: | 16-409 |
| Cow position: | chr22:11030710-11031129 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 187 |
| Conread position: | 19-409 |
| Cow position: | chr22:5307871-5308272 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 45 |
| Conread position: | 19-409 |
| Cow position: | chr22:5933226-5932827 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 179 |
| Conread position: | 19-409 |
| Cow position: | chr22:44353194-44352789 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 128 |
| Conread position: | 22-380 |
| Cow position: | chr22:36267134-36267499 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 35, 176 |
| Conread position: | 22-409 |
| Cow position: | chr22:16200249-16200643 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 36 |
| Conread position: | 33-342 |
| Cow position: | chr22:327381-327057 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 50 |
| Conread position: | 46-279 |
| Cow position: | chr22:1285140-1284894 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 79, 152 |
| Conread position: | 48-392 |
| Cow position: | chr22:871063-870714 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 246 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 5, 13 |
| Conread position: | 49-409 |
| Cow position: | chr22:21589130-21589493 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 15 |
| Conread position: | 62-341 |
| Cow position: | chr22:1293689-1293395 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 25, 130 |
| Conread position: | 63-216 |
| Cow position: | chr22:10076943-10076786 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 47, 42 |
| Conread position: | 63-281 |
| Cow position: | chr22:6985063-6985296 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-335 |
| Cow position: | chr22:12732036-12731756 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 56, 116 |
| Conread position: | 63-394 |
| Cow position: | chr22:37131458-37131798 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 127 |
| Conread position: | 63-409 |
| Cow position: | chr22:158094-157738 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 128 |
| Conread position: | 63-409 |
| Cow position: | chr22:536909-537270 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr22:693440-693795 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 141 |
| Conread position: | 63-409 |
| Cow position: | chr22:3278545-3278185 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 111 |
| Conread position: | 63-409 |
| Cow position: | chr22:5233497-5233136 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr22:5672545-5672906 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 129 |
| Conread position: | 63-409 |
| Cow position: | chr22:8136388-8136032 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 197 |
| Conread position: | 63-409 |
| Cow position: | chr22:13917311-13917672 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 129 |
| Conread position: | 63-409 |
| Cow position: | chr22:18816573-18816216 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 129 |
| Conread position: | 63-409 |
| Cow position: | chr22:24949638-24949999 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr22:35672547-35672187 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr22:36183567-36183926 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr22:39882367-39882007 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 63-409 |
| Cow position: | chr22:44489695-44490056 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-411 |
| Cow position: | chr22:27283857-27284202 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 124 |
| Conread position: | 63-411 |
| Cow position: | chr22:27309965-27309602 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 129 |
| Conread position: | 63-414 |
| Cow position: | chr22:560891-560532 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 42 |
| Conread position: | 64-409 |
| Cow position: | chr22:525867-525524 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 124 |
| Conread position: | 64-409 |
| Cow position: | chr22:1878601-1878962 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 128 |
| Conread position: | 64-409 |
| Cow position: | chr22:46635888-46635545 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 55, 82 |
| Conread position: | 65-354 |
| Cow position: | chr22:37265264-37265568 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 127 |
| Conread position: | 65-412 |
| Cow position: | chr22:34598485-34598837 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 99 |
| Conread position: | 66-388 |
| Cow position: | chr22:34606874-34607204 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 44, 129 |
| Conread position: | 66-405 |
| Cow position: | chr22:298521-298176 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 52, 133 |
| Conread position: | 82-409 |
| Cow position: | chr22:6503837-6503508 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 104 |
| Conread position: | 83-409 |
| Cow position: | chr22:36274638-36274979 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 38, 73 |
| Conread position: | 85-409 |
| Cow position: | chr22:46547834-46547495 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 107 |
| Conread position: | 91-409 |
| Cow position: | chr22:36533901-36533574 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 98 |
| Conread position: | 107-412 |
| Cow position: | chr22:44475108-44475416 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 11, 60 |
| Conread position: | 115-409 |
| Cow position: | chr22:46581715-46581419 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 49, 69 |
| Conread position: | 129-409 |
| Cow position: | chr22:42771359-42771624 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 256, 53 |
| Conread position: | 132-392 |
| Cow position: | chr22:8874881-8875141 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 81, 50 |
| Conread position: | 134-409 |
| Cow position: | chr22:10909949-10909664 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 209 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 81, 48 |
| Conread position: | 136-409 |
| Cow position: | chr22:7277415-7277690 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 107 |
| Conread position: | 136-409 |
| Cow position: | chr22:20240950-20240672 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 46 |
| Conread position: | 136-411 |
| Cow position: | chr22:1048302-1048574 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 75, 61 |
| Conread position: | 140-319 |
| Cow position: | chr22:13772873-13773053 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 39, 87 |
| Conread position: | 148-409 |
| Cow position: | chr22:6020565-6020831 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 176-409 |
| Cow position: | chr22:44396382-44396619 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 35, 6 |
| Conread position: | 198-379 |
| Cow position: | chr22:41238133-41238312 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 47, 30 |
| Conread position: | 204-409 |
| Cow position: | chr22:309742-309947 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 181, 149 |
| Conread position: | 205-365 |
| Cow position: | chr22:1860846-1860687 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 230-406 |
| Cow position: | chr22:35943215-35943040 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 152, 19 |
| Conread position: | 260-409 |
| Cow position: | chr22:1283629-1283481 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 125, 10 |
| Conread position: | 277-409 |
| Cow position: | chr22:31936663-31936531 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 108, 72 |
| Conread position: | 296-409 |
| Cow position: | chr22:38938027-38937914 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 89, 57 |
Show alignments to all cow chromosomes.