Cow genome map
| Conread name: | Ss1.1-rthg26_l18.5 |
| Conread position: | 6-406 |
| Cow position: | chr23:27399244-27399670 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 197 |
| Conread position: | 6-409 |
| Cow position: | chr23:4640884-4640455 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 197 |
| Conread position: | 7-394 |
| Cow position: | chr23:28913153-28913551 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 289 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 5, 196 |
| Conread position: | 7-409 |
| Cow position: | chr23:988900-988479 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 315 |
| Conread position: | 9-409 |
| Cow position: | chr23:967604-967181 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 196 |
| Conread position: | 11-393 |
| Cow position: | chr23:1025310-1024907 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 101 |
| Conread position: | 11-406 |
| Cow position: | chr23:15220152-15219725 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 201 |
| Conread position: | 11-409 |
| Cow position: | chr23:2795816-2795396 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 188 |
| Conread position: | 11-409 |
| Cow position: | chr23:4276704-4277124 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 187 |
| Conread position: | 11-409 |
| Cow position: | chr23:4888426-4888842 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 192 |
| Conread position: | 11-409 |
| Cow position: | chr23:5779339-5778918 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 190 |
| Conread position: | 11-409 |
| Cow position: | chr23:5875026-5874610 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 192 |
| Conread position: | 11-409 |
| Cow position: | chr23:7273403-7273800 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 96 |
| Conread position: | 11-409 |
| Cow position: | chr23:15176820-15177243 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 11-409 |
| Cow position: | chr23:15525359-15525779 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 188 |
| Conread position: | 11-409 |
| Cow position: | chr23:30636556-30636132 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 192 |
| Conread position: | 11-409 |
| Cow position: | chr23:36031623-36031204 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 187 |
| Conread position: | 11-411 |
| Cow position: | chr23:19332651-19332237 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 153 |
| Conread position: | 11-414 |
| Cow position: | chr23:3881949-3881532 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 188 |
| Conread position: | 14-407 |
| Cow position: | chr23:19489289-19489709 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 186 |
| Conread position: | 14-409 |
| Cow position: | chr23:2027367-2026950 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 189 |
| Conread position: | 46-409 |
| Cow position: | chr23:38578083-38578446 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 72, 64 |
| Conread position: | 47-409 |
| Cow position: | chr23:2524404-2524028 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 144 |
| Conread position: | 48-405 |
| Cow position: | chr23:20156437-20156052 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 14 |
| Conread position: | 49-409 |
| Cow position: | chr23:16617053-16616677 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 63-210 |
| Cow position: | chr23:8980684-8980528 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 60, 128 |
| Conread position: | 63-372 |
| Cow position: | chr23:11778294-11778601 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 63 |
| Conread position: | 63-395 |
| Cow position: | chr23:2574374-2574691 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 322, 27 |
| Conread position: | 63-408 |
| Cow position: | chr23:14974754-14974395 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 130 |
| Conread position: | 63-409 |
| Cow position: | chr23:2313429-2313071 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 129 |
| Conread position: | 63-409 |
| Cow position: | chr23:3013455-3013815 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 7 |
| Conread position: | 63-409 |
| Cow position: | chr23:4359638-4359999 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 129 |
| Conread position: | 63-409 |
| Cow position: | chr23:4434273-4434629 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 115 |
| Conread position: | 63-409 |
| Cow position: | chr23:4815881-4816244 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 302 |
| Conread position: | 63-409 |
| Cow position: | chr23:14965938-14965583 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 194 |
| Conread position: | 63-409 |
| Cow position: | chr23:19950775-19950414 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 129 |
| Conread position: | 63-409 |
| Cow position: | chr23:20302020-20302382 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 132 |
| Conread position: | 63-409 |
| Cow position: | chr23:28217099-28217459 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr23:31446623-31446984 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 64-436 |
| Cow position: | chr23:4509910-4510267 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 55, 126 |
| Conread position: | 67-380 |
| Cow position: | chr23:6216386-6216709 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 12, 137 |
| Conread position: | 70-378 |
| Cow position: | chr23:2340220-2340532 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 51, 26 |
| Conread position: | 132-409 |
| Cow position: | chr23:22147363-22147081 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 50 |
| Conread position: | 136-409 |
| Cow position: | chr23:25684163-25683894 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 47 |
| Conread position: | 136-409 |
| Cow position: | chr23:29474662-29474388 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 91 |
| Conread position: | 136-409 |
| Cow position: | chr23:31591917-31591633 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 36 |
| Conread position: | 136-412 |
| Cow position: | chr23:1327569-1327302 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 67, 49 |
| Conread position: | 138-409 |
| Cow position: | chr23:2757487-2757763 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 44 |
| Conread position: | 166-411 |
| Cow position: | chr23:36211207-36210951 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 195-409 |
| Cow position: | chr23:31595282-31595067 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 45, 154 |
| Conread position: | 218-368 |
| Cow position: | chr23:31651575-31651433 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 293-409 |
| Cow position: | chr23:22875620-22875506 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 92, 53 |
Show alignments to all cow chromosomes.