Cow genome map

Conread name: Ss1.1-rthg26_l18.5

Conread position: 6-323
Cow position: chr24:17187372-17187709 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 132

Conread position: 6-411
Cow position: chr24:14384785-14384358 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 299
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 45, 37

Conread position: 7-409
Cow position: chr24:1447396-1447809 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 181

Conread position: 11-259
Cow position: chr24:13531702-13531431 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 199
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 29, 81

Conread position: 11-375
Cow position: chr24:14390890-14390511 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 32

Conread position: 11-409
Cow position: chr24:12114202-12113792 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 83

Conread position: 11-409
Cow position: chr24:12797929-12797513 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 167

Conread position: 11-409
Cow position: chr24:15392472-15392084 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 186

Conread position: 11-409
Cow position: chr24:16649469-16649062 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 193

Conread position: 11-409
Cow position: chr24:19833215-19833640 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 189

Conread position: 11-409
Cow position: chr24:33933199-33933621 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 38

Conread position: 19-409
Cow position: chr24:4415684-4415274 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 182

Conread position: 33-410
Cow position: chr24:14885380-14884996 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 267
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 24, 98

Conread position: 45-373
Cow position: chr24:39678305-39678627 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 242
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 8, 135

Conread position: 48-395
Cow position: chr24:9092391-9092041 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 14

Conread position: 48-409
Cow position: chr24:6145242-6145623 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 14

Conread position: 62-368
Cow position: chr24:40654282-40654599 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 218
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 23, 132

Conread position: 63-191
Cow position: chr24:13021562-13021699 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 56, 128

Conread position: 63-253
Cow position: chr24:12288832-12288630 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 55, 127

Conread position: 63-307
Cow position: chr24:2636014-2636270 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 200
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 56, 129

Conread position: 63-309
Cow position: chr24:6645309-6645568 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 127

Conread position: 63-318
Cow position: chr24:7060996-7061264 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 90

Conread position: 63-384
Cow position: chr24:13188079-13188416 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-393
Cow position: chr24:33739450-33739098 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 253
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 56, 128

Conread position: 63-400
Cow position: chr24:12161773-12162121 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 128

Conread position: 63-409
Cow position: chr24:148720-148364 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 109

Conread position: 63-409
Cow position: chr24:6025201-6024841 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 129

Conread position: 63-409
Cow position: chr24:6083911-6084272 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr24:6434135-6434495 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 129

Conread position: 63-409
Cow position: chr24:8030045-8030406 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr24:9188837-9188476 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 129

Conread position: 63-409
Cow position: chr24:12086092-12086453 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 181

Conread position: 63-409
Cow position: chr24:12236948-12237309 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 252
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 56, 135

Conread position: 63-409
Cow position: chr24:12485423-12485062 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 129

Conread position: 63-409
Cow position: chr24:14584988-14585331 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 126

Conread position: 63-409
Cow position: chr24:16084766-16084404 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr24:22793068-22793427 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 116

Conread position: 63-409
Cow position: chr24:22952030-22952391 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr24:40548771-40549129 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr24:44017440-44017801 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-412
Cow position: chr24:6335593-6335941 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 128

Conread position: 64-395
Cow position: chr24:35838730-35838375 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 128

Conread position: 70-408
Cow position: chr24:36560182-36559833 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 125

Conread position: 78-370
Cow position: chr24:38635670-38635969 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 215
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 57, 40

Conread position: 78-395
Cow position: chr24:12131575-12131245 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 110

Conread position: 82-392
Cow position: chr24:35841699-35841385 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 33

Conread position: 84-409
Cow position: chr24:37216919-37217255 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 109

Conread position: 84-411
Cow position: chr24:6537466-6537798 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 230
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 41, 114

Conread position: 90-372
Cow position: chr24:12224548-12224245 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 29, 105

Conread position: 118-409
Cow position: chr24:6660655-6660344 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 71

Conread position: 138-375
Cow position: chr24:6048248-6048478 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 163
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 191, 46

Conread position: 141-381
Cow position: chr24:17696985-17696747 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 180
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 73, 22

Conread position: 165-408
Cow position: chr24:13524126-13524358 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 178
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 220, 17

Conread position: 182-411
Cow position: chr24:12335748-12335517 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 169
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 16, 168

Conread position: 205-409
Cow position: chr24:29187334-29187538 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 155
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 180, 143

Show alignments to all cow chromosomes.