Cow genome map
| Conread name: | Ss1.1-rthg26_l18.5 |
| Conread position: | 6-395 |
| Cow position: | chr25:18276042-18275637 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 198 |
| Conread position: | 7-409 |
| Cow position: | chr25:8674698-8675127 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 197 |
| Conread position: | 11-209 |
| Cow position: | chr25:18411503-18411283 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 163 |
| Conread position: | 11-409 |
| Cow position: | chr25:11375558-11375137 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 189 |
| Conread position: | 11-409 |
| Cow position: | chr25:13780824-13781241 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 185 |
| Conread position: | 11-409 |
| Cow position: | chr25:18060798-18060391 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 295 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 38, 181 |
| Conread position: | 11-409 |
| Cow position: | chr25:18890227-18889805 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 192 |
| Conread position: | 11-409 |
| Cow position: | chr25:22147283-22147706 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 14 |
| Conread position: | 11-409 |
| Cow position: | chr25:25506438-25506860 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 192 |
| Conread position: | 11-409 |
| Cow position: | chr25:34347204-34346806 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 291 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 48, 192 |
| Conread position: | 11-409 |
| Cow position: | chr25:34656657-34656235 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 191 |
| Conread position: | 11-414 |
| Cow position: | chr25:14015965-14016380 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 32 |
| Conread position: | 14-409 |
| Cow position: | chr25:35362628-35362218 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 184 |
| Conread position: | 15-407 |
| Cow position: | chr25:17468901-17468489 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 185 |
| Conread position: | 23-405 |
| Cow position: | chr25:18255555-18255161 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 264 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 42, 171 |
| Conread position: | 23-414 |
| Cow position: | chr25:18092819-18093225 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 94 |
| Conread position: | 49-409 |
| Cow position: | chr25:26279106-26279468 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 17 |
| Conread position: | 63-326 |
| Cow position: | chr25:17560760-17560477 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 56, 32 |
| Conread position: | 63-356 |
| Cow position: | chr25:33991205-33990902 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 31 |
| Conread position: | 63-393 |
| Cow position: | chr25:26922082-26922412 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 251 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 56, 13 |
| Conread position: | 63-397 |
| Cow position: | chr25:20777046-20776698 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 128 |
| Conread position: | 63-409 |
| Cow position: | chr25:18027778-18027414 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 135 |
| Conread position: | 63-409 |
| Cow position: | chr25:19916934-19917295 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr25:20629428-20629782 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr25:36240397-36240767 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 132 |
| Conread position: | 63-412 |
| Cow position: | chr25:32579818-32580180 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 127 |
| Conread position: | 64-271 |
| Cow position: | chr25:18173214-18173436 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 61, 128 |
| Conread position: | 64-409 |
| Cow position: | chr25:12942849-12942489 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 128 |
| Conread position: | 64-409 |
| Cow position: | chr25:17589696-17589343 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 127 |
| Conread position: | 70-409 |
| Cow position: | chr25:11933667-11933319 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 50, 124 |
| Conread position: | 70-411 |
| Cow position: | chr25:12759739-12759384 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 28, 142 |
| Conread position: | 132-412 |
| Cow position: | chr25:23345410-23345123 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 136-409 |
| Cow position: | chr25:27022633-27022355 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 46 |
| Conread position: | 148-406 |
| Cow position: | chr25:536848-536597 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 237, 11 |
| Conread position: | 148-409 |
| Cow position: | chr25:33665919-33665662 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 152-388 |
| Cow position: | chr25:18421618-18421857 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 62, 33 |
| Conread position: | 171-409 |
| Cow position: | chr25:18195130-18194887 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 43, 11 |
| Conread position: | 270-412 |
| Cow position: | chr25:34014414-34014274 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
Show alignments to all cow chromosomes.