Cow genome map
| Conread name: | Ss1.1-rthg26_l18.5 |
| Conread position: | 7-411 |
| Cow position: | chr28:17935238-17934823 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 111, 16 |
| Conread position: | 9-409 |
| Cow position: | chr28:1387603-1387186 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 191 |
| Conread position: | 9-413 |
| Cow position: | chr28:9155497-9155063 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 371 |
| Conread position: | 11-256 |
| Cow position: | chr28:15681683-15681940 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 38, 185 |
| Conread position: | 11-310 |
| Cow position: | chr28:34324618-34324927 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 38, 190 |
| Conread position: | 11-331 |
| Cow position: | chr28:24652081-24652420 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 41, 191 |
| Conread position: | 11-366 |
| Cow position: | chr28:7817021-7817373 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 255 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 51, 32 |
| Conread position: | 11-395 |
| Cow position: | chr28:5565651-5566053 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 343 |
| Conread position: | 11-408 |
| Cow position: | chr28:9953925-9954345 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 196 |
| Conread position: | 11-409 |
| Cow position: | chr28:782188-782608 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 189 |
| Conread position: | 11-409 |
| Cow position: | chr28:1504645-1505065 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 188 |
| Conread position: | 11-409 |
| Cow position: | chr28:3193001-3192578 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 11-409 |
| Cow position: | chr28:4381027-4380631 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 99 |
| Conread position: | 11-409 |
| Cow position: | chr28:5812500-5812905 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 189 |
| Conread position: | 11-409 |
| Cow position: | chr28:7740307-7740699 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 32 |
| Conread position: | 11-409 |
| Cow position: | chr28:7901144-7901568 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 368 |
| Conread position: | 11-409 |
| Cow position: | chr28:8378357-8378782 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 189 |
| Conread position: | 11-409 |
| Cow position: | chr28:8721652-8721235 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 85 |
| Conread position: | 11-409 |
| Cow position: | chr28:10582195-10581773 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 191 |
| Conread position: | 11-409 |
| Cow position: | chr28:10619311-10618901 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 184 |
| Conread position: | 11-409 |
| Cow position: | chr28:13459761-13460183 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 190 |
| Conread position: | 11-409 |
| Cow position: | chr28:14705881-14705458 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 11-409 |
| Cow position: | chr28:17388271-17388695 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 363 |
| Conread position: | 11-409 |
| Cow position: | chr28:21358810-21359215 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 180 |
| Conread position: | 11-409 |
| Cow position: | chr28:22261361-22260937 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 11-409 |
| Cow position: | chr28:32792589-32792166 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 191 |
| Conread position: | 11-411 |
| Cow position: | chr28:18102136-18101728 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 51, 120 |
| Conread position: | 11-412 |
| Cow position: | chr28:12150112-12150521 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 64 |
| Conread position: | 14-409 |
| Cow position: | chr28:1952926-1953343 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 185 |
| Conread position: | 14-409 |
| Cow position: | chr28:15378199-15377779 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 189 |
| Conread position: | 49-409 |
| Cow position: | chr28:17667670-17667300 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 17 |
| Conread position: | 49-409 |
| Cow position: | chr28:33252159-33252525 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 17 |
| Conread position: | 63-356 |
| Cow position: | chr28:15950834-15951139 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 289 |
| Conread position: | 63-356 |
| Cow position: | chr28:26426421-26426118 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 129 |
| Conread position: | 63-409 |
| Cow position: | chr28:1815015-1814654 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr28:2083457-2083810 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 127 |
| Conread position: | 63-409 |
| Cow position: | chr28:5114947-5114598 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 132 |
| Conread position: | 63-409 |
| Cow position: | chr28:6780476-6780120 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 295 |
| Conread position: | 63-409 |
| Cow position: | chr28:7001841-7002203 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 129 |
| Conread position: | 63-409 |
| Cow position: | chr28:7822110-7822471 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr28:12410357-12410012 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 66 |
| Conread position: | 63-409 |
| Cow position: | chr28:13441024-13440663 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 129 |
| Conread position: | 63-409 |
| Cow position: | chr28:14750401-14750760 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr28:24587286-24587648 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 129 |
| Conread position: | 63-412 |
| Cow position: | chr28:15920613-15920248 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 129 |
| Conread position: | 64-249 |
| Cow position: | chr28:17330669-17330473 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 71, 125 |
| Conread position: | 64-409 |
| Cow position: | chr28:2591770-2592128 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 64-409 |
| Cow position: | chr28:18520607-18520246 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 128 |
| Conread position: | 65-409 |
| Cow position: | chr28:2989829-2989503 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 30 |
| Conread position: | 70-409 |
| Cow position: | chr28:24667440-24667793 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 97 |
| Conread position: | 73-395 |
| Cow position: | chr28:12233115-12232802 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 52 |
| Conread position: | 78-328 |
| Cow position: | chr28:6657439-6657173 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 43, 113 |
| Conread position: | 80-409 |
| Cow position: | chr28:7790428-7790071 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 281 |
| Conread position: | 91-407 |
| Cow position: | chr28:9137168-9136840 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 102 |
| Conread position: | 115-409 |
| Cow position: | chr28:2724982-2724677 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 73 |
| Conread position: | 136-292 |
| Cow position: | chr28:22233753-22233593 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 76, 45 |
| Conread position: | 136-410 |
| Cow position: | chr28:34648879-34649157 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 78, 62 |
| Conread position: | 150-408 |
| Cow position: | chr28:21325755-21326003 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 235, 47 |
| Conread position: | 175-414 |
| Cow position: | chr28:5751729-5751488 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 23, 175 |
| Conread position: | 184-409 |
| Cow position: | chr28:1167899-1167668 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 30, 96 |
| Conread position: | 198-406 |
| Cow position: | chr28:29819736-29819944 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 187, 150 |
| Conread position: | 204-409 |
| Cow position: | chr28:34593987-34594192 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 181, 135 |
| Conread position: | 228-411 |
| Cow position: | chr28:2846140-2845959 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 157, 96 |
| Conread position: | 232-409 |
| Cow position: | chr28:1931948-1931771 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 153, 117 |
| Conread position: | 233-409 |
| Cow position: | chr28:5797470-5797645 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 151, 72 |
Show alignments to all cow chromosomes.