Cow genome map

Conread name: Ss1.1-rthg26_l18.5

Conread position: 1-409
Cow position:
Alignm length: 434
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 114

Conread position: 5-330
Cow position:
Alignm length: 353
Alignm identity: 258
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 38, 15

Conread position: 6-409
Cow position:
Alignm length: 428
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 199

Conread position: 11-332
Cow position:
Alignm length: 350
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 193

Conread position: 11-395
Cow position:
Alignm length: 412
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 191

Conread position: 11-400
Cow position:
Alignm length: 400
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 135

Conread position: 11-406
Cow position:
Alignm length: 423
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 363

Conread position: 11-409
Cow position:
Alignm length: 423
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 360

Conread position: 11-409
Cow position:
Alignm length: 423
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 188

Conread position: 11-409
Cow position:
Alignm length: 424
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 193

Conread position: 11-409
Cow position:
Alignm length: 425
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 190

Conread position: 11-409
Cow position:
Alignm length: 424
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 168

Conread position: 11-409
Cow position:
Alignm length: 430
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 171

Conread position: 11-409
Cow position:
Alignm length: 422
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 191

Conread position: 11-409
Cow position:
Alignm length: 427
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 192

Conread position: 11-409
Cow position:
Alignm length: 427
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 192

Conread position: 11-409
Cow position:
Alignm length: 423
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 167

Conread position: 11-412
Cow position:
Alignm length: 428
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 189

Conread position: 11-414
Cow position:
Alignm length: 432
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 192

Conread position: 14-409
Cow position:
Alignm length: 417
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 182

Conread position: 14-409
Cow position:
Alignm length: 421
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 186

Conread position: 15-409
Cow position:
Alignm length: 419
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 188

Conread position: 20-376
Cow position:
Alignm length: 384
Alignm identity: 251
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 37, 184

Conread position: 32-411
Cow position:
Alignm length: 402
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 140

Conread position: 46-394
Cow position:
Alignm length: 364
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 16

Conread position: 46-409
Cow position:
Alignm length: 378
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 176

Conread position: 49-409
Cow position:
Alignm length: 372
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 17

Conread position: 49-409
Cow position:
Alignm length: 377
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 13

Conread position: 49-409
Cow position:
Alignm length: 377
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 17

Conread position: 49-414
Cow position:
Alignm length: 387
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 147

Conread position: 51-331
Cow position:
Alignm length: 296
Alignm identity: 196
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 74, 22

Conread position: 63-212
Cow position:
Alignm length: 160
Alignm identity: 125
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 56, 128

Conread position: 63-318
Cow position:
Alignm length: 272
Alignm identity: 204
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 56, 127

Conread position: 63-341
Cow position:
Alignm length: 296
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 130

Conread position: 63-381
Cow position:
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 13

Conread position: 63-390
Cow position:
Alignm length: 344
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 115

Conread position: 63-391
Cow position:
Alignm length: 340
Alignm identity: 228
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 55, 132

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 91

Conread position: 63-409
Cow position:
Alignm length: 365
Alignm identity: 254
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 60, 129

Conread position: 63-409
Cow position:
Alignm length: 358
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 129

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 129

Conread position: 63-409
Cow position:
Alignm length: 382
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 136

Conread position: 63-409
Cow position:
Alignm length: 355
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 125

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 129

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position:
Alignm length: 358
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 25

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 129

Conread position: 63-409
Cow position:
Alignm length: 348
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 91

Conread position: 63-409
Cow position:
Alignm length: 360
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-410
Cow position:
Alignm length: 363
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 129

Conread position: 64-409
Cow position:
Alignm length: 358
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 175

Conread position: 65-409
Cow position:
Alignm length: 363
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 128

Conread position: 78-409
Cow position:
Alignm length: 343
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 114

Conread position: 78-409
Cow position:
Alignm length: 349
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 114

Conread position: 83-252
Cow position:
Alignm length: 185
Alignm identity: 139
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 35, 12

Conread position: 91-316
Cow position:
Alignm length: 241
Alignm identity: 181
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 34, 99

Conread position: 92-411
Cow position:
Alignm length: 335
Alignm identity: 234
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 26, 105

Conread position: 132-409
Cow position:
Alignm length: 279
Alignm identity: 207
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 253, 50

Conread position: 133-409
Cow position:
Alignm length: 284
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 49

Conread position: 136-409
Cow position:
Alignm length: 281
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 46

Conread position: 138-409
Cow position:
Alignm length: 279
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 44

Conread position: 139-411
Cow position:
Alignm length: 273
Alignm identity: 182
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 144-410
Cow position:
Alignm length: 268
Alignm identity: 184
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 207, 49

Conread position: 148-409
Cow position:
Alignm length: 268
Alignm identity: 189
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 35, 168

Conread position: 148-409
Cow position:
Alignm length: 268
Alignm identity: 192
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 35, 168

Conread position: 157-409
Cow position:
Alignm length: 262
Alignm identity: 188
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 35, 25

Conread position: 161-409
Cow position:
Alignm length: 256
Alignm identity: 188
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 53, 22

Conread position: 162-420
Cow position:
Alignm length: 271
Alignm identity: 185
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 52, 23

Conread position: 173-412
Cow position:
Alignm length: 251
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 9

Conread position: 177-350
Cow position:
Alignm length: 177
Alignm identity: 128
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 30, 8

Conread position: 178-386
Cow position:
Alignm length: 211
Alignm identity: 142
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 161, 7

Conread position: 182-409
Cow position:
Alignm length: 231
Alignm identity: 175
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 27, 13

Conread position: 207-409
Cow position:
Alignm length: 204
Alignm identity: 157
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 178, 146

Show alignments to all cow chromosomes.