Cow genome map
Conread name: | Ss1.1-rthg26_l18.5 |
Conread position: | 1-409 |
Cow position: | chr29:30811280-30811707 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 308 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 114 |
Conread position: | 5-330 |
Cow position: | chr29:21427304-21426958 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 258 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 38, 15 |
Conread position: | 6-409 |
Cow position: | chr29:17662672-17663083 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 307 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 199 |
Conread position: | 11-332 |
Cow position: | chr29:21246324-21246672 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 193 |
Conread position: | 11-395 |
Cow position: | chr29:26165066-26164657 (view UCSC Genome Browser custom track) |
Alignm length: | 412 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 191 |
Conread position: | 11-400 |
Cow position: | chr29:2750631-2750247 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 135 |
Conread position: | 11-406 |
Cow position: | chr29:7431460-7431039 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 306 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 363 |
Conread position: | 11-409 |
Cow position: | chr29:48720-48299 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 360 |
Conread position: | 11-409 |
Cow position: | chr29:2689661-2690080 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 310 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 188 |
Conread position: | 11-409 |
Cow position: | chr29:2841609-2841194 (view UCSC Genome Browser custom track) |
Alignm length: | 424 |
Alignm identity: | 306 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 193 |
Conread position: | 11-409 |
Cow position: | chr29:16022287-16022709 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 302 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 190 |
Conread position: | 11-409 |
Cow position: | chr29:19623488-19623068 (view UCSC Genome Browser custom track) |
Alignm length: | 424 |
Alignm identity: | 303 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 168 |
Conread position: | 11-409 |
Cow position: | chr29:19652864-19653287 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 307 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 171 |
Conread position: | 11-409 |
Cow position: | chr29:27041004-27040590 (view UCSC Genome Browser custom track) |
Alignm length: | 422 |
Alignm identity: | 308 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 191 |
Conread position: | 11-409 |
Cow position: | chr29:32539566-32539989 (view UCSC Genome Browser custom track) |
Alignm length: | 427 |
Alignm identity: | 308 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 192 |
Conread position: | 11-409 |
Cow position: | chr29:43322315-43322734 (view UCSC Genome Browser custom track) |
Alignm length: | 427 |
Alignm identity: | 311 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 192 |
Conread position: | 11-409 |
Cow position: | chr29:45459475-45459892 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 301 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 167 |
Conread position: | 11-412 |
Cow position: | chr29:34800051-34799626 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 310 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 189 |
Conread position: | 11-414 |
Cow position: | chr29:2099600-2100028 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 313 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 192 |
Conread position: | 14-409 |
Cow position: | chr29:10648486-10648072 (view UCSC Genome Browser custom track) |
Alignm length: | 417 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 182 |
Conread position: | 14-409 |
Cow position: | chr29:15895089-15894671 (view UCSC Genome Browser custom track) |
Alignm length: | 421 |
Alignm identity: | 303 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 186 |
Conread position: | 15-409 |
Cow position: | chr29:11049044-11049457 (view UCSC Genome Browser custom track) |
Alignm length: | 419 |
Alignm identity: | 306 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 188 |
Conread position: | 20-376 |
Cow position: | chr29:24198855-24198474 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 251 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 37, 184 |
Conread position: | 32-411 |
Cow position: | chr29:43366209-43365811 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 140 |
Conread position: | 46-394 |
Cow position: | chr29:13853216-13852861 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 16 |
Conread position: | 46-409 |
Cow position: | chr29:15950383-15950012 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 176 |
Conread position: | 49-409 |
Cow position: | chr29:10824148-10823790 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 17 |
Conread position: | 49-409 |
Cow position: | chr29:20250967-20251338 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 13 |
Conread position: | 49-409 |
Cow position: | chr29:25932736-25932365 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 74, 17 |
Conread position: | 49-414 |
Cow position: | chr29:23975640-23976023 (view UCSC Genome Browser custom track) |
Alignm length: | 387 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 147 |
Conread position: | 51-331 |
Cow position: | chr29:11855406-11855697 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 196 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 74, 22 |
Conread position: | 63-212 |
Cow position: | chr29:31121624-31121782 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 125 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 56, 128 |
Conread position: | 63-318 |
Cow position: | chr29:31180942-31181212 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 204 |
Alignm E-value: | 4.2039e-45 |
Alignm gaps (pig, cow): | 56, 127 |
Conread position: | 63-341 |
Cow position: | chr29:28060847-28060553 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 223 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 130 |
Conread position: | 63-381 |
Cow position: | chr29:15969329-15969001 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 13 |
Conread position: | 63-390 |
Cow position: | chr29:16109548-16109887 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 115 |
Conread position: | 63-391 |
Cow position: | chr29:4635148-4634815 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 228 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 55, 132 |
Conread position: | 63-409 |
Cow position: | chr29:610793-610433 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 91 |
Conread position: | 63-409 |
Cow position: | chr29:5957421-5957783 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 254 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 60, 129 |
Conread position: | 63-409 |
Cow position: | chr29:6266675-6266322 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 129 |
Conread position: | 63-409 |
Cow position: | chr29:7840615-7840975 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 129 |
Conread position: | 63-409 |
Cow position: | chr29:10848292-10847913 (view UCSC Genome Browser custom track) |
Alignm length: | 382 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 136 |
Conread position: | 63-409 |
Cow position: | chr29:16769951-16770302 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 72, 125 |
Conread position: | 63-409 |
Cow position: | chr29:19884888-19885249 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 129 |
Conread position: | 63-409 |
Cow position: | chr29:27250516-27250163 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 129 |
Conread position: | 63-409 |
Cow position: | chr29:32315859-32316220 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 129 |
Conread position: | 63-409 |
Cow position: | chr29:35196492-35196843 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 25 |
Conread position: | 63-409 |
Cow position: | chr29:35296693-35297053 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 129 |
Conread position: | 63-409 |
Cow position: | chr29:38226820-38227159 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 240 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 322, 91 |
Conread position: | 63-409 |
Cow position: | chr29:39079887-39079533 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 129 |
Conread position: | 63-410 |
Cow position: | chr29:40503160-40502800 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 129 |
Conread position: | 64-409 |
Cow position: | chr29:1715068-1715421 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 175 |
Conread position: | 65-409 |
Cow position: | chr29:21543545-21543190 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 128 |
Conread position: | 78-409 |
Cow position: | chr29:104407-104746 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 114 |
Conread position: | 78-409 |
Cow position: | chr29:27981084-27980738 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 114 |
Conread position: | 83-252 |
Cow position: | chr29:43791021-43791202 (view UCSC Genome Browser custom track) |
Alignm length: | 185 |
Alignm identity: | 139 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 35, 12 |
Conread position: | 91-316 |
Cow position: | chr29:5983333-5983094 (view UCSC Genome Browser custom track) |
Alignm length: | 241 |
Alignm identity: | 181 |
Alignm E-value: | 6e-38 |
Alignm gaps (pig, cow): | 34, 99 |
Conread position: | 92-411 |
Cow position: | chr29:11841514-11841843 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 234 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 26, 105 |
Conread position: | 132-409 |
Cow position: | chr29:45587448-45587181 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 207 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 253, 50 |
Conread position: | 133-409 |
Cow position: | chr29:14585826-14586101 (view UCSC Genome Browser custom track) |
Alignm length: | 284 |
Alignm identity: | 215 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 49 |
Conread position: | 136-409 |
Cow position: | chr29:670155-669878 (view UCSC Genome Browser custom track) |
Alignm length: | 281 |
Alignm identity: | 216 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 46 |
Conread position: | 138-409 |
Cow position: | chr29:18857041-18856765 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 209 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 44 |
Conread position: | 139-411 |
Cow position: | chr29:16017230-16016972 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 182 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 40, 0 |
Conread position: | 144-410 |
Cow position: | chr29:13648327-13648578 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 184 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 207, 49 |
Conread position: | 148-409 |
Cow position: | chr29:42650198-42650463 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 189 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 35, 168 |
Conread position: | 148-409 |
Cow position: | chr29:42802058-42802323 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 192 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 35, 168 |
Conread position: | 157-409 |
Cow position: | chr29:2466414-2466155 (view UCSC Genome Browser custom track) |
Alignm length: | 262 |
Alignm identity: | 188 |
Alignm E-value: | 6e-37 |
Alignm gaps (pig, cow): | 35, 25 |
Conread position: | 161-409 |
Cow position: | chr29:13581998-13582248 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 188 |
Alignm E-value: | 8e-40 |
Alignm gaps (pig, cow): | 53, 22 |
Conread position: | 162-420 |
Cow position: | chr29:803424-803158 (view UCSC Genome Browser custom track) |
Alignm length: | 271 |
Alignm identity: | 185 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 52, 23 |
Conread position: | 173-412 |
Cow position: | chr29:9643820-9643574 (view UCSC Genome Browser custom track) |
Alignm length: | 251 |
Alignm identity: | 197 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 9 |
Conread position: | 177-350 |
Cow position: | chr29:4332170-4332343 (view UCSC Genome Browser custom track) |
Alignm length: | 177 |
Alignm identity: | 128 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 30, 8 |
Conread position: | 178-386 |
Cow position: | chr29:10844195-10844403 (view UCSC Genome Browser custom track) |
Alignm length: | 211 |
Alignm identity: | 142 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 161, 7 |
Conread position: | 182-409 |
Cow position: | chr29:12796414-12796186 (view UCSC Genome Browser custom track) |
Alignm length: | 231 |
Alignm identity: | 175 |
Alignm E-value: | 3.9937e-43 |
Alignm gaps (pig, cow): | 27, 13 |
Conread position: | 207-409 |
Cow position: | chr29:410548-410346 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 157 |
Alignm E-value: | 3.00004e-41 |
Alignm gaps (pig, cow): | 178, 146 |
Show alignments to all cow chromosomes.