Cow genome map

Conread name: Ss1.1-rthg26_l18.5

Conread position: 1-409
Cow position: chr29:30811280-30811707 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 114

Conread position: 5-330
Cow position: chr29:21427304-21426958 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 258
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 38, 15

Conread position: 6-409
Cow position: chr29:17662672-17663083 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 199

Conread position: 11-332
Cow position: chr29:21246324-21246672 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 193

Conread position: 11-395
Cow position: chr29:26165066-26164657 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 191

Conread position: 11-400
Cow position: chr29:2750631-2750247 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 135

Conread position: 11-406
Cow position: chr29:7431460-7431039 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 363

Conread position: 11-409
Cow position: chr29:48720-48299 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 360

Conread position: 11-409
Cow position: chr29:2689661-2690080 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 188

Conread position: 11-409
Cow position: chr29:2841609-2841194 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 193

Conread position: 11-409
Cow position: chr29:16022287-16022709 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 190

Conread position: 11-409
Cow position: chr29:19623488-19623068 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 168

Conread position: 11-409
Cow position: chr29:19652864-19653287 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 171

Conread position: 11-409
Cow position: chr29:27041004-27040590 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 191

Conread position: 11-409
Cow position: chr29:32539566-32539989 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 192

Conread position: 11-409
Cow position: chr29:43322315-43322734 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 192

Conread position: 11-409
Cow position: chr29:45459475-45459892 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 167

Conread position: 11-412
Cow position: chr29:34800051-34799626 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 189

Conread position: 11-414
Cow position: chr29:2099600-2100028 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 192

Conread position: 14-409
Cow position: chr29:10648486-10648072 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 182

Conread position: 14-409
Cow position: chr29:15895089-15894671 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 186

Conread position: 15-409
Cow position: chr29:11049044-11049457 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 188

Conread position: 20-376
Cow position: chr29:24198855-24198474 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 251
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 37, 184

Conread position: 32-411
Cow position: chr29:43366209-43365811 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 140

Conread position: 46-394
Cow position: chr29:13853216-13852861 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 16

Conread position: 46-409
Cow position: chr29:15950383-15950012 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 176

Conread position: 49-409
Cow position: chr29:10824148-10823790 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 17

Conread position: 49-409
Cow position: chr29:20250967-20251338 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 13

Conread position: 49-409
Cow position: chr29:25932736-25932365 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 17

Conread position: 49-414
Cow position: chr29:23975640-23976023 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 147

Conread position: 51-331
Cow position: chr29:11855406-11855697 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 196
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 74, 22

Conread position: 63-212
Cow position: chr29:31121624-31121782 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 56, 128

Conread position: 63-318
Cow position: chr29:31180942-31181212 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 204
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 56, 127

Conread position: 63-341
Cow position: chr29:28060847-28060553 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 130

Conread position: 63-381
Cow position: chr29:15969329-15969001 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 13

Conread position: 63-390
Cow position: chr29:16109548-16109887 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 115

Conread position: 63-391
Cow position: chr29:4635148-4634815 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 228
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 55, 132

Conread position: 63-409
Cow position: chr29:610793-610433 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 91

Conread position: 63-409
Cow position: chr29:5957421-5957783 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 254
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 60, 129

Conread position: 63-409
Cow position: chr29:6266675-6266322 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 129

Conread position: 63-409
Cow position: chr29:7840615-7840975 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 129

Conread position: 63-409
Cow position: chr29:10848292-10847913 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 136

Conread position: 63-409
Cow position: chr29:16769951-16770302 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 125

Conread position: 63-409
Cow position: chr29:19884888-19885249 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr29:27250516-27250163 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 129

Conread position: 63-409
Cow position: chr29:32315859-32316220 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr29:35196492-35196843 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 25

Conread position: 63-409
Cow position: chr29:35296693-35297053 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 129

Conread position: 63-409
Cow position: chr29:38226820-38227159 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 91

Conread position: 63-409
Cow position: chr29:39079887-39079533 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-410
Cow position: chr29:40503160-40502800 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 129

Conread position: 64-409
Cow position: chr29:1715068-1715421 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 175

Conread position: 65-409
Cow position: chr29:21543545-21543190 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 128

Conread position: 78-409
Cow position: chr29:104407-104746 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 114

Conread position: 78-409
Cow position: chr29:27981084-27980738 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 114

Conread position: 83-252
Cow position: chr29:43791021-43791202 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 35, 12

Conread position: 91-316
Cow position: chr29:5983333-5983094 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 181
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 34, 99

Conread position: 92-411
Cow position: chr29:11841514-11841843 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 234
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 26, 105

Conread position: 132-409
Cow position: chr29:45587448-45587181 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 207
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 253, 50

Conread position: 133-409
Cow position: chr29:14585826-14586101 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 49

Conread position: 136-409
Cow position: chr29:670155-669878 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 46

Conread position: 138-409
Cow position: chr29:18857041-18856765 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 44

Conread position: 139-411
Cow position: chr29:16017230-16016972 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 182
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 144-410
Cow position: chr29:13648327-13648578 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 184
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 207, 49

Conread position: 148-409
Cow position: chr29:42650198-42650463 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 189
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 35, 168

Conread position: 148-409
Cow position: chr29:42802058-42802323 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 192
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 35, 168

Conread position: 157-409
Cow position: chr29:2466414-2466155 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 188
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 35, 25

Conread position: 161-409
Cow position: chr29:13581998-13582248 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 188
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 53, 22

Conread position: 162-420
Cow position: chr29:803424-803158 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 185
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 52, 23

Conread position: 173-412
Cow position: chr29:9643820-9643574 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 9

Conread position: 177-350
Cow position: chr29:4332170-4332343 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 30, 8

Conread position: 178-386
Cow position: chr29:10844195-10844403 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 142
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 161, 7

Conread position: 182-409
Cow position: chr29:12796414-12796186 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 175
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 27, 13

Conread position: 207-409
Cow position: chr29:410548-410346 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 157
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 178, 146

Show alignments to all cow chromosomes.