Cow genome map
| Conread name: | Ss1.1-rthg26_l18.5 |
| Conread position: | 5-409 |
| Cow position: | chr4:6490875-6490463 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 196 |
| Conread position: | 5-409 |
| Cow position: | chr4:48025874-48026299 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 108 |
| Conread position: | 8-409 |
| Cow position: | chr4:46663679-46664093 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 116 |
| Conread position: | 9-410 |
| Cow position: | chr4:36895850-36896272 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 194 |
| Conread position: | 10-409 |
| Cow position: | chr4:24445723-24445299 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 182 |
| Conread position: | 11-210 |
| Cow position: | chr4:12608026-12607808 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 38, 191 |
| Conread position: | 11-216 |
| Cow position: | chr4:10408259-10408485 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 52, 191 |
| Conread position: | 11-319 |
| Cow position: | chr4:31668794-31669122 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 190 |
| Conread position: | 11-366 |
| Cow position: | chr4:33493290-33493666 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 11-379 |
| Cow position: | chr4:3829970-3830346 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 159 |
| Conread position: | 11-409 |
| Cow position: | chr4:355392-355811 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 188 |
| Conread position: | 11-409 |
| Cow position: | chr4:3961073-3961493 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 189 |
| Conread position: | 11-409 |
| Cow position: | chr4:5879656-5880067 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 173 |
| Conread position: | 11-409 |
| Cow position: | chr4:13492054-13492477 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 363 |
| Conread position: | 11-409 |
| Cow position: | chr4:16359369-16359785 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 187 |
| Conread position: | 11-409 |
| Cow position: | chr4:28830516-28830931 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 196 |
| Conread position: | 11-409 |
| Cow position: | chr4:29532236-29531813 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 11-409 |
| Cow position: | chr4:43320158-43319744 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 11-409 |
| Cow position: | chr4:43880587-43881010 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 192 |
| Conread position: | 11-409 |
| Cow position: | chr4:44724561-44724985 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 192 |
| Conread position: | 11-409 |
| Cow position: | chr4:45049817-45049396 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 189 |
| Conread position: | 11-409 |
| Cow position: | chr4:66179508-66179086 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 190 |
| Conread position: | 11-411 |
| Cow position: | chr4:39272461-39272032 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 194 |
| Conread position: | 14-407 |
| Cow position: | chr4:157997-158415 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 188 |
| Conread position: | 14-409 |
| Cow position: | chr4:602478-602895 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 186 |
| Conread position: | 14-409 |
| Cow position: | chr4:1464439-1464022 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 183 |
| Conread position: | 14-409 |
| Cow position: | chr4:18425036-18424623 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 185 |
| Conread position: | 14-409 |
| Cow position: | chr4:21338505-21338101 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 183 |
| Conread position: | 21-407 |
| Cow position: | chr4:27332942-27333335 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 172 |
| Conread position: | 21-409 |
| Cow position: | chr4:496449-496056 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 276 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 22, 153 |
| Conread position: | 23-276 |
| Cow position: | chr4:51044390-51044129 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 98, 172 |
| Conread position: | 32-341 |
| Cow position: | chr4:15263483-15263160 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 16, 45 |
| Conread position: | 43-380 |
| Cow position: | chr4:4175954-4176301 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 23, 164 |
| Conread position: | 46-242 |
| Cow position: | chr4:21564670-21564874 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 79, 123 |
| Conread position: | 46-409 |
| Cow position: | chr4:4905681-4906048 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 16 |
| Conread position: | 48-392 |
| Cow position: | chr4:1497225-1496874 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 51-395 |
| Cow position: | chr4:41330972-41331325 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 11 |
| Conread position: | 56-280 |
| Cow position: | chr4:11383945-11384177 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 64, 137 |
| Conread position: | 60-411 |
| Cow position: | chr4:8598600-8598253 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 125 |
| Conread position: | 61-392 |
| Cow position: | chr4:24198655-24198329 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 177, 5 |
| Conread position: | 63-212 |
| Cow position: | chr4:23114635-23114477 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 56, 128 |
| Conread position: | 63-352 |
| Cow position: | chr4:40406042-40405751 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 47, 126 |
| Conread position: | 63-405 |
| Cow position: | chr4:1371473-1371103 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 259 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 56, 319 |
| Conread position: | 63-407 |
| Cow position: | chr4:101388-101033 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 129 |
| Conread position: | 63-408 |
| Cow position: | chr4:66925546-66925897 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 127 |
| Conread position: | 63-409 |
| Cow position: | chr4:528534-528895 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr4:969496-969143 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 55, 110 |
| Conread position: | 63-409 |
| Cow position: | chr4:1931079-1930722 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 126 |
| Conread position: | 63-409 |
| Cow position: | chr4:3125322-3125697 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr4:6269087-6268726 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 300 |
| Conread position: | 63-409 |
| Cow position: | chr4:12241678-12241316 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr4:13547569-13547931 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr4:16056145-16056503 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr4:18516437-18516798 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr4:25600071-25599717 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 113 |
| Conread position: | 63-409 |
| Cow position: | chr4:30307913-30307557 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 131 |
| Conread position: | 63-409 |
| Cow position: | chr4:32211708-32212069 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr4:33073556-33073208 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-409 |
| Cow position: | chr4:34185322-34184978 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 119 |
| Conread position: | 63-409 |
| Cow position: | chr4:65223993-65223632 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-411 |
| Cow position: | chr4:47764629-47764267 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 63-414 |
| Cow position: | chr4:57979172-57979534 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 198 |
| Conread position: | 64-409 |
| Cow position: | chr4:11618403-11618755 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 124 |
| Conread position: | 64-409 |
| Cow position: | chr4:17926712-17926353 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 123 |
| Conread position: | 64-409 |
| Cow position: | chr4:26887301-26886961 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 126 |
| Conread position: | 64-409 |
| Cow position: | chr4:47718065-47717705 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 132 |
| Conread position: | 66-411 |
| Cow position: | chr4:40824701-40824349 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 59, 129 |
| Conread position: | 99-409 |
| Cow position: | chr4:60264983-60264666 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 89 |
| Conread position: | 132-409 |
| Cow position: | chr4:41119632-41119915 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 51 |
| Conread position: | 136-395 |
| Cow position: | chr4:23493370-23493624 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 16, 10 |
| Conread position: | 136-410 |
| Cow position: | chr4:17530796-17530527 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 72, 49 |
| Conread position: | 137-406 |
| Cow position: | chr4:6214927-6214660 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 72, 48 |
| Conread position: | 165-395 |
| Cow position: | chr4:60673526-60673750 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 40, 28 |
| Conread position: | 169-409 |
| Cow position: | chr4:12586957-12587200 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 17, 182 |
| Conread position: | 185-409 |
| Cow position: | chr4:61256568-61256793 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 27, 174 |
| Conread position: | 205-409 |
| Cow position: | chr4:9355073-9354869 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 180, 134 |
| Conread position: | 258-409 |
| Cow position: | chr4:27443205-27443359 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 264-398 |
| Cow position: | chr4:11384716-11384850 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 121, 84 |
Show alignments to all cow chromosomes.