Cow genome map

Conread name: Ss1.1-rthg26_l18.5

Conread position: 5-395
Cow position:
Alignm length: 432
Alignm identity: 299
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 16, 39

Conread position: 6-409
Cow position:
Alignm length: 429
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 194

Conread position: 7-409
Cow position:
Alignm length: 428
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 38

Conread position: 11-212
Cow position:
Alignm length: 216
Alignm identity: 156
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 37, 70

Conread position: 11-212
Cow position:
Alignm length: 220
Alignm identity: 158
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 32, 188

Conread position: 11-256
Cow position:
Alignm length: 270
Alignm identity: 192
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 46, 186

Conread position: 11-353
Cow position:
Alignm length: 369
Alignm identity: 258
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 40, 171

Conread position: 11-367
Cow position:
Alignm length: 369
Alignm identity: 254
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 44, 127

Conread position: 11-394
Cow position:
Alignm length: 408
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 101

Conread position: 11-402
Cow position:
Alignm length: 400
Alignm identity: 276
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 50, 121

Conread position: 11-404
Cow position:
Alignm length: 406
Alignm identity: 278
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 46, 33

Conread position: 11-407
Cow position:
Alignm length: 423
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 190

Conread position: 11-409
Cow position:
Alignm length: 437
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 341

Conread position: 11-409
Cow position:
Alignm length: 427
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 192

Conread position: 11-409
Cow position:
Alignm length: 431
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 190

Conread position: 11-409
Cow position:
Alignm length: 423
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 195

Conread position: 11-409
Cow position:
Alignm length: 425
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 190

Conread position: 11-409
Cow position:
Alignm length: 424
Alignm identity: 292
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 52, 99

Conread position: 11-409
Cow position:
Alignm length: 422
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 189

Conread position: 11-409
Cow position:
Alignm length: 427
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 26

Conread position: 11-409
Cow position:
Alignm length: 423
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 156

Conread position: 11-409
Cow position:
Alignm length: 423
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 19

Conread position: 11-409
Cow position:
Alignm length: 428
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 185

Conread position: 11-409
Cow position:
Alignm length: 428
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 189

Conread position: 11-409
Cow position:
Alignm length: 428
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 193

Conread position: 11-409
Cow position:
Alignm length: 425
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 183

Conread position: 11-412
Cow position:
Alignm length: 412
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 71

Conread position: 11-414
Cow position:
Alignm length: 418
Alignm identity: 271
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 47, 86

Conread position: 11-447
Cow position:
Alignm length: 462
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 189

Conread position: 14-330
Cow position:
Alignm length: 341
Alignm identity: 239
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 29, 82

Conread position: 14-409
Cow position:
Alignm length: 420
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 186

Conread position: 14-409
Cow position:
Alignm length: 420
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 185

Conread position: 14-409
Cow position:
Alignm length: 421
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 185

Conread position: 14-409
Cow position:
Alignm length: 424
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 189

Conread position: 18-309
Cow position:
Alignm length: 308
Alignm identity: 209
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 8, 16

Conread position: 18-357
Cow position:
Alignm length: 364
Alignm identity: 258
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 5, 182

Conread position: 20-409
Cow position:
Alignm length: 405
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 79

Conread position: 23-316
Cow position:
Alignm length: 307
Alignm identity: 206
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 95, 33

Conread position: 26-356
Cow position:
Alignm length: 347
Alignm identity: 224
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 39, 171

Conread position: 27-411
Cow position:
Alignm length: 405
Alignm identity: 270
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 9, 77

Conread position: 48-409
Cow position:
Alignm length: 378
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 21

Conread position: 49-409
Cow position:
Alignm length: 374
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 17

Conread position: 49-409
Cow position:
Alignm length: 371
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 17

Conread position: 51-393
Cow position:
Alignm length: 354
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 7

Conread position: 62-390
Cow position:
Alignm length: 346
Alignm identity: 243
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 57, 130

Conread position: 63-191
Cow position:
Alignm length: 139
Alignm identity: 110
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 56, 128

Conread position: 63-200
Cow position:
Alignm length: 148
Alignm identity: 117
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 56, 128

Conread position: 63-212
Cow position:
Alignm length: 158
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 58, 115

Conread position: 63-323
Cow position:
Alignm length: 277
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-334
Cow position:
Alignm length: 288
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 132

Conread position: 63-404
Cow position:
Alignm length: 359
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position:
Alignm length: 365
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 130

Conread position: 63-409
Cow position:
Alignm length: 363
Alignm identity: 247
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 58, 106

Conread position: 63-409
Cow position:
Alignm length: 361
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 289

Conread position: 63-409
Cow position:
Alignm length: 360
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 13

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position:
Alignm length: 360
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position:
Alignm length: 358
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 128

Conread position: 63-409
Cow position:
Alignm length: 359
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 140

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position:
Alignm length: 370
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position:
Alignm length: 365
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 101

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 129

Conread position: 63-409
Cow position:
Alignm length: 368
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 13

Conread position: 63-409
Cow position:
Alignm length: 368
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position:
Alignm length: 371
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 128

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 129

Conread position: 63-409
Cow position:
Alignm length: 365
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 130

Conread position: 63-409
Cow position:
Alignm length: 363
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position:
Alignm length: 365
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 13

Conread position: 63-409
Cow position:
Alignm length: 364
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 129

Conread position: 63-409
Cow position:
Alignm length: 375
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-411
Cow position:
Alignm length: 366
Alignm identity: 259
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 58, 137

Conread position: 64-409
Cow position:
Alignm length: 363
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 64-409
Cow position:
Alignm length: 363
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 128

Conread position: 64-409
Cow position:
Alignm length: 364
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 31

Conread position: 64-409
Cow position:
Alignm length: 365
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 128

Conread position: 64-409
Cow position:
Alignm length: 375
Alignm identity: 264
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 55, 126

Conread position: 64-409
Cow position:
Alignm length: 363
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 128

Conread position: 66-330
Cow position:
Alignm length: 280
Alignm identity: 185
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 54, 128

Conread position: 66-409
Cow position:
Alignm length: 364
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 126

Conread position: 70-395
Cow position:
Alignm length: 333
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 48

Conread position: 86-409
Cow position:
Alignm length: 331
Alignm identity: 228
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 111, 56

Conread position: 96-409
Cow position:
Alignm length: 323
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 31

Conread position: 129-411
Cow position:
Alignm length: 285
Alignm identity: 196
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 256, 67

Conread position: 132-409
Cow position:
Alignm length: 279
Alignm identity: 184
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 253, 53

Conread position: 132-409
Cow position:
Alignm length: 286
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 50

Conread position: 137-375
Cow position:
Alignm length: 239
Alignm identity: 164
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 48, 0

Conread position: 138-409
Cow position:
Alignm length: 276
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 204

Conread position: 158-409
Cow position:
Alignm length: 259
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 24

Conread position: 165-409
Cow position:
Alignm length: 246
Alignm identity: 181
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 219, 13

Conread position: 172-393
Cow position:
Alignm length: 230
Alignm identity: 155
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 32, 13

Conread position: 194-409
Cow position:
Alignm length: 217
Alignm identity: 164
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 191, 20

Conread position: 195-409
Cow position:
Alignm length: 216
Alignm identity: 161
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 186, 136

Conread position: 198-405
Cow position:
Alignm length: 210
Alignm identity: 148
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 94, 151

Conread position: 202-351
Cow position:
Alignm length: 150
Alignm identity: 111
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 212-409
Cow position:
Alignm length: 203
Alignm identity: 152
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 141, 0

Show alignments to all cow chromosomes.