Cow genome map

Conread name: Ss1.1-rthg26_l18.5

Conread position: 5-409
Cow position: chr8:38607517-38607110 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 59

Conread position: 10-368
Cow position: chr8:42165225-42164864 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 247
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 41, 167

Conread position: 10-409
Cow position: chr8:46091867-46091454 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 9

Conread position: 11-296
Cow position: chr8:44077025-44076738 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 214
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 46, 186

Conread position: 11-365
Cow position: chr8:8402207-8401829 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 263
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 46, 189

Conread position: 11-405
Cow position: chr8:50289159-50288740 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 192

Conread position: 11-406
Cow position: chr8:39196224-39195804 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 192

Conread position: 11-409
Cow position: chr8:2171387-2170964 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 191

Conread position: 11-409
Cow position: chr8:4686387-4686808 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 93

Conread position: 11-409
Cow position: chr8:8910219-8910636 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 12

Conread position: 11-409
Cow position: chr8:17311010-17311433 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 165

Conread position: 11-409
Cow position: chr8:24916345-24915922 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 48

Conread position: 11-409
Cow position: chr8:25407440-25407860 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 192

Conread position: 11-409
Cow position: chr8:32319555-32319134 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 193

Conread position: 11-409
Cow position: chr8:38390359-38390783 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 192

Conread position: 11-409
Cow position: chr8:44244583-44244158 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 192

Conread position: 11-409
Cow position: chr8:45448444-45448872 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 188

Conread position: 11-409
Cow position: chr8:49214421-49214842 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 102

Conread position: 11-409
Cow position: chr8:50993780-50994203 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 191

Conread position: 11-409
Cow position: chr8:59262902-59262478 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 192

Conread position: 11-411
Cow position: chr8:33588370-33588791 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 192

Conread position: 11-414
Cow position: chr8:10743634-10743211 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 187

Conread position: 11-414
Cow position: chr8:23770631-23771054 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 185

Conread position: 13-412
Cow position: chr8:36636548-36636125 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 190

Conread position: 13-412
Cow position: chr8:36637663-36637240 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 190

Conread position: 14-393
Cow position: chr8:53427323-53427720 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 76

Conread position: 14-409
Cow position: chr8:1319044-1319460 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 183

Conread position: 14-409
Cow position: chr8:3857019-3856599 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 188

Conread position: 14-409
Cow position: chr8:5016177-5016596 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 170

Conread position: 14-409
Cow position: chr8:8557141-8556733 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 50

Conread position: 14-409
Cow position: chr8:10748375-10748790 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 185

Conread position: 14-409
Cow position: chr8:11970565-11970176 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 22

Conread position: 14-409
Cow position: chr8:45161364-45160959 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 181

Conread position: 15-409
Cow position: chr8:27983802-27983380 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 190

Conread position: 23-404
Cow position: chr8:13735657-13736055 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 41

Conread position: 30-409
Cow position: chr8:23216760-23217175 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 292
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 34, 46

Conread position: 46-409
Cow position: chr8:11831738-11832115 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 16

Conread position: 48-260
Cow position: chr8:51668217-51668002 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 73, 16

Conread position: 48-332
Cow position: chr8:30490693-30490402 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 215
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 78, 24

Conread position: 49-409
Cow position: chr8:47662283-47661910 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 13

Conread position: 55-409
Cow position: chr8:42759010-42759359 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 137

Conread position: 63-233
Cow position: chr8:36292225-36292401 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 56, 126

Conread position: 63-236
Cow position: chr8:19329010-19329198 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 56, 128

Conread position: 63-252
Cow position: chr8:12505052-12505253 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 56, 128

Conread position: 63-317
Cow position: chr8:29581996-29582268 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 207
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 56, 128

Conread position: 63-395
Cow position: chr8:12543955-12543645 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 234
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 322, 66

Conread position: 63-395
Cow position: chr8:44693350-44693685 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 110

Conread position: 63-395
Cow position: chr8:45189150-45189485 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 128

Conread position: 63-403
Cow position: chr8:23766332-23765989 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 240
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 58, 79

Conread position: 63-407
Cow position: chr8:1154253-1153894 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 129

Conread position: 63-408
Cow position: chr8:24420470-24420124 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 126

Conread position: 63-409
Cow position: chr8:2885799-2886166 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 128

Conread position: 63-409
Cow position: chr8:8229727-8229366 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 129

Conread position: 63-409
Cow position: chr8:8518525-8518168 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 127

Conread position: 63-409
Cow position: chr8:8656161-8655803 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr8:9275074-9275426 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 128

Conread position: 63-409
Cow position: chr8:9540435-9540080 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 109

Conread position: 63-409
Cow position: chr8:9735303-9735662 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 127

Conread position: 63-409
Cow position: chr8:11801290-11801649 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr8:14928938-14928578 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 299

Conread position: 63-409
Cow position: chr8:19050542-19050891 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 125

Conread position: 63-409
Cow position: chr8:22572240-22571880 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr8:25522453-25522816 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr8:25776610-25776258 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 63

Conread position: 63-409
Cow position: chr8:27578462-27578817 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 129

Conread position: 63-409
Cow position: chr8:32631968-32631612 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 13

Conread position: 63-409
Cow position: chr8:32930569-32930925 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 125

Conread position: 63-409
Cow position: chr8:42483983-42484327 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 258
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 47, 128

Conread position: 63-409
Cow position: chr8:44036726-44036364 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 32

Conread position: 63-409
Cow position: chr8:45317068-45316710 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 10

Conread position: 63-409
Cow position: chr8:47069752-47069390 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr8:47074324-47074683 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 63-409
Cow position: chr8:47670511-47670875 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 10

Conread position: 63-409
Cow position: chr8:61035310-61034953 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 116

Conread position: 63-410
Cow position: chr8:45693571-45693213 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 128

Conread position: 63-411
Cow position: chr8:3784765-3785127 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 16

Conread position: 63-411
Cow position: chr8:46222270-46221915 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 235
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 52, 39

Conread position: 63-412
Cow position: chr8:50934177-50934519 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 56

Conread position: 63-422
Cow position: chr8:8316580-8316215 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 127

Conread position: 64-212
Cow position: chr8:46945071-46944917 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 55, 31

Conread position: 64-409
Cow position: chr8:11761358-11761694 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 243
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 57, 74

Conread position: 70-409
Cow position: chr8:13808663-13809016 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 245
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 40, 125

Conread position: 70-409
Cow position: chr8:61067178-61066831 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 125

Conread position: 77-409
Cow position: chr8:1349176-1348820 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 250
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 34, 115

Conread position: 79-407
Cow position: chr8:42161650-42161313 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 113

Conread position: 90-409
Cow position: chr8:11821404-11821728 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 37

Conread position: 91-409
Cow position: chr8:33430018-33430340 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 73

Conread position: 99-409
Cow position: chr8:27925417-27925730 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 81

Conread position: 136-409
Cow position: chr8:47885171-47885448 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 51

Conread position: 137-405
Cow position: chr8:9135752-9135490 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 191
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 90, 48

Conread position: 137-409
Cow position: chr8:6065630-6065353 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 45

Conread position: 137-411
Cow position: chr8:15688011-15687740 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 185
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 248, 48

Conread position: 138-411
Cow position: chr8:47491682-47491414 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 192
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 247, 45

Conread position: 139-409
Cow position: chr8:21158677-21158403 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 45

Conread position: 164-409
Cow position: chr8:14591746-14591487 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 189
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 50, 18

Conread position: 164-409
Cow position: chr8:60060547-60060797 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 192
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 38, 18

Conread position: 166-409
Cow position: chr8:46633231-46632983 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 172
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 39, 19

Conread position: 171-409
Cow position: chr8:26005426-26005182 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 182
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 43, 14

Conread position: 179-409
Cow position: chr8:11774102-11774325 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 169
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 205, 36

Conread position: 185-409
Cow position: chr8:25542693-25542918 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 163

Conread position: 189-409
Cow position: chr8:46944723-46944505 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 25, 38

Conread position: 203-372
Cow position: chr8:9264039-9263870 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 147, 60

Conread position: 228-409
Cow position: chr8:19329970-19330151 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 143
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 157, 120

Conread position: 228-409
Cow position: chr8:42467559-42467740 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 143
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 157, 108

Conread position: 234-412
Cow position: chr8:12449188-12449366 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 151, 102

Conread position: 246-406
Cow position: chr8:20276676-20276833 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 139, 52

Show alignments to all cow chromosomes.