Cow genome map
| Conread name: | Ss1.1-rton1215b_c21.5 |
| Conread position: | 23-248 |
| Cow position: | chr5:19881474-19881249 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 110 |
| Conread position: | 24-248 |
| Cow position: | chr5:19897680-19897456 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-248 |
| Cow position: | chr5:20074398-20074174 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-248 |
| Cow position: | chr5:20227372-20227148 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 109 |
| Conread position: | 24-248 |
| Cow position: | chr5:20281293-20281069 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 109 |
| Conread position: | 24-258 |
| Cow position: | chr5:20374691-20374456 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 0 |
| Conread position: | 25-239 |
| Cow position: | chr5:19679014-19679222 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 102, 107 |
| Conread position: | 25-241 |
| Cow position: | chr5:19690075-19690291 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 102, 108 |
| Conread position: | 25-241 |
| Cow position: | chr5:19755779-19755563 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 102, 108 |
| Conread position: | 25-241 |
| Cow position: | chr5:19772099-19772314 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 102, 15 |
| Conread position: | 25-241 |
| Cow position: | chr5:19784723-19784507 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 102, 108 |
| Conread position: | 25-248 |
| Cow position: | chr5:20259105-20258882 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 108 |
| Conread position: | 25-248 |
| Cow position: | chr5:20330332-20330109 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-248 |
| Cow position: | chr5:19986845-19986626 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 64 |
| Conread position: | 29-248 |
| Cow position: | chr5:20005643-20005424 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 64 |
| Conread position: | 29-248 |
| Cow position: | chr5:20023274-20023055 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 64 |
| Conread position: | 29-263 |
| Cow position: | chr5:20298362-20298127 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 106 |
| Conread position: | 31-241 |
| Cow position: | chr5:19830948-19830738 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 96, 102 |
| Conread position: | 31-248 |
| Cow position: | chr5:20057303-20057086 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 97 |
| Conread position: | 31-248 |
| Cow position: | chr5:20093850-20093633 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 44 |
| Conread position: | 31-248 |
| Cow position: | chr5:20116538-20116321 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 44 |
| Conread position: | 32-241 |
| Cow position: | chr5:19864139-19863930 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 95, 101 |
| Conread position: | 32-248 |
| Cow position: | chr5:19818634-19818850 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 95, 101 |
| Conread position: | 32-248 |
| Cow position: | chr5:19849132-19848916 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 43, 48 |
| Conread position: | 37-248 |
| Cow position: | chr5:20314746-20314535 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 51-248 |
| Cow position: | chr5:20131439-20131242 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 157 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 54-248 |
| Cow position: | chr5:20191517-20191323 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 157 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 73, 79 |
| Conread position: | 57-248 |
| Cow position: | chr5:19570219-19570028 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 156 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 70, 76 |
| Conread position: | 80-248 |
| Cow position: | chr5:19746396-19746565 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 10, 53 |
| Conread position: | 134-248 |
| Cow position: | chr5:24472625-24472739 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 285-454 |
| Cow position: | chr5:20329745-20329576 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-543 |
| Cow position: | chr5:20329665-20329508 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.