Cow genome map
| Conread name: | Ss1.1-rtra04_n22.5 |
| Conread position: | 700-984 |
| Cow position: | chr1:44589349-44589624 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 17, 6 |
| Conread position: | 703-1047 |
| Cow position: | chr1:36275421-36275060 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 9 |
| Conread position: | 707-975 |
| Cow position: | chr1:71299253-71298991 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 44, 107 |
| Conread position: | 711-920 |
| Cow position: | chr1:88287619-88287413 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 63, 27 |
| Conread position: | 711-972 |
| Cow position: | chr1:29871728-29871991 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 711-975 |
| Cow position: | chr1:39014255-39014513 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 40, 25 |
| Conread position: | 711-978 |
| Cow position: | chr1:32895370-32895103 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 61, 39 |
| Conread position: | 711-988 |
| Cow position: | chr1:17915665-17915391 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 29 |
| Conread position: | 711-1033 |
| Cow position: | chr1:3830834-3830517 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 25, 31 |
| Conread position: | 712-917 |
| Cow position: | chr1:66224902-66225098 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 62, 114 |
| Conread position: | 713-839 |
| Cow position: | chr1:26577371-26577499 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 713-839 |
| Cow position: | chr1:26578486-26578614 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 713-893 |
| Cow position: | chr1:41580297-41580112 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 61, 107 |
| Conread position: | 713-893 |
| Cow position: | chr1:57185841-57186017 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 112, 39 |
| Conread position: | 713-899 |
| Cow position: | chr1:85322984-85322804 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 113, 55 |
| Conread position: | 713-906 |
| Cow position: | chr1:91708070-91708264 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 82, 165 |
| Conread position: | 713-966 |
| Cow position: | chr1:62798000-62797754 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 27 |
| Conread position: | 713-975 |
| Cow position: | chr1:78942842-78943111 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 174 |
| Conread position: | 713-978 |
| Cow position: | chr1:44202769-44203022 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 61, 41 |
| Conread position: | 716-1042 |
| Cow position: | chr1:36266275-36266609 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 10 |
| Conread position: | 718-975 |
| Cow position: | chr1:48940073-48940331 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 161 |
| Conread position: | 719-949 |
| Cow position: | chr1:51589916-51590135 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 55, 24 |
| Conread position: | 722-913 |
| Cow position: | chr1:52196402-52196590 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 52, 133 |
| Conread position: | 722-975 |
| Cow position: | chr1:30310721-30310475 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 52, 89 |
| Conread position: | 722-1042 |
| Cow position: | chr1:97037467-97037779 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 52, 23 |
| Conread position: | 723-1026 |
| Cow position: | chr1:54626481-54626797 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 17 |
| Conread position: | 724-886 |
| Cow position: | chr1:11048148-11048303 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 102, 45 |
| Conread position: | 724-975 |
| Cow position: | chr1:68809902-68810139 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 170, 16 |
| Conread position: | 726-1091 |
| Cow position: | chr1:32843373-32842991 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 48, 106 |
| Conread position: | 727-908 |
| Cow position: | chr1:62050457-62050275 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 47, 151 |
| Conread position: | 739-980 |
| Cow position: | chr1:73255345-73255587 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 35, 54 |
| Conread position: | 741-1026 |
| Cow position: | chr1:80616495-80616772 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 218 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 32, 54 |
| Conread position: | 750-891 |
| Cow position: | chr1:10960797-10960657 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 67 |
| Conread position: | 750-927 |
| Cow position: | chr1:26439854-26440032 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 148 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 24, 129 |
| Conread position: | 751-893 |
| Cow position: | chr1:10995641-10995784 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 23, 127 |
| Conread position: | 752-978 |
| Cow position: | chr1:99303100-99303339 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 23, 142 |
| Conread position: | 768-893 |
| Cow position: | chr1:88724586-88724462 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 6, 99 |
| Conread position: | 789-902 |
| Cow position: | chr1:26826119-26826231 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 37, 88 |
| Conread position: | 790-1042 |
| Cow position: | chr1:86999863-87000122 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 88 |
| Conread position: | 825-1026 |
| Cow position: | chr1:33840078-33839870 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 93, 26 |
| Conread position: | 828-979 |
| Cow position: | chr1:72103336-72103194 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 829-980 |
| Cow position: | chr1:26109790-26109937 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 829-1026 |
| Cow position: | chr1:60436109-60436314 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 116, 49 |
| Conread position: | 829-1042 |
| Cow position: | chr1:45857536-45857748 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 116, 49 |
| Conread position: | 844-976 |
| Cow position: | chr1:36664143-36664011 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 16, 34 |
| Conread position: | 844-1027 |
| Cow position: | chr1:91880464-91880645 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 101, 33 |
| Conread position: | 844-1058 |
| Cow position: | chr1:12905721-12905939 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 101, 33 |
| Conread position: | 851-1051 |
| Cow position: | chr1:15999343-15999549 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 94, 24 |
| Conread position: | 854-975 |
| Cow position: | chr1:70263688-70263566 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 92, 23 |
| Conread position: | 1039-1265 |
| Cow position: | chr1:71137103-71136883 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 12, 79 |
| Conread position: | 1041-1359 |
| Cow position: | chr1:39127686-39127373 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 227 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 68, 24 |
| Conread position: | 1041-1364 |
| Cow position: | chr1:49099831-49100147 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 13, 37 |
| Conread position: | 1042-1368 |
| Cow position: | chr1:46348635-46348302 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 21, 94 |
| Conread position: | 1045-1280 |
| Cow position: | chr1:26375329-26375095 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 64, 20 |
| Conread position: | 1047-1359 |
| Cow position: | chr1:74529466-74529150 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 13, 228 |
| Conread position: | 1048-1361 |
| Cow position: | chr1:25912120-25911798 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 19, 125 |
| Conread position: | 1048-1368 |
| Cow position: | chr1:85048545-85048858 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 20, 69 |
| Conread position: | 1062-1360 |
| Cow position: | chr1:61222954-61222651 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 51, 177 |
| Conread position: | 1114-1364 |
| Cow position: | chr1:24421898-24422151 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 127, 72 |
| Conread position: | 1151-1364 |
| Cow position: | chr1:15612845-15613057 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 42, 73 |
Show alignments to all cow chromosomes.