Cow genome map


           Conread name:
           Ss1.1-rtra04_n22.5
        

               Conread position:
               700-984
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               17, 6
               

               Conread position:
               703-1047
               

               Cow position:
               
               

               Alignm length:
               365
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 9
               

               Conread position:
               707-975
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               44, 107
               

               Conread position:
               711-920
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               63, 27
               

               Conread position:
               711-972
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               36, 10
               

               Conread position:
               711-975
               

               Cow position:
               
               

               Alignm length:
               271
               

               Alignm identity:
               204
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               40, 25
               

               Conread position:
               711-978
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               202
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               61, 39
               

               Conread position:
               711-988
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 29
               

               Conread position:
               711-1033
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               232
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               25, 31
               

               Conread position:
               712-917
               

               Cow position:
               
               

               Alignm length:
               207
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               62, 114
               

               Conread position:
               713-839
               

               Cow position:
               
               

               Alignm length:
               129
               

               Alignm identity:
               100
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               713-839
               

               Cow position:
               
               

               Alignm length:
               129
               

               Alignm identity:
               100
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               713-893
               

               Cow position:
               
               

               Alignm length:
               190
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               61, 107
               

               Conread position:
               713-893
               

               Cow position:
               
               

               Alignm length:
               182
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               112, 39
               

               Conread position:
               713-899
               

               Cow position:
               
               

               Alignm length:
               188
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               113, 55
               

               Conread position:
               713-906
               

               Cow position:
               
               

               Alignm length:
               196
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               82, 165
               

               Conread position:
               713-966
               

               Cow position:
               
               

               Alignm length:
               256
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 27
               

               Conread position:
               713-975
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 174
               

               Conread position:
               713-978
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               201
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               61, 41
               

               Conread position:
               716-1042
               

               Cow position:
               
               

               Alignm length:
               338
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 10
               

               Conread position:
               718-975
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 161
               

               Conread position:
               719-949
               

               Cow position:
               
               

               Alignm length:
               233
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               55, 24
               

               Conread position:
               722-913
               

               Cow position:
               
               

               Alignm length:
               195
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               52, 133
               

               Conread position:
               722-975
               

               Cow position:
               
               

               Alignm length:
               256
               

               Alignm identity:
               191
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               52, 89
               

               Conread position:
               722-1042
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               230
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               52, 23
               

               Conread position:
               723-1026
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 17
               

               Conread position:
               724-886
               

               Cow position:
               
               

               Alignm length:
               164
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               102, 45
               

               Conread position:
               724-975
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               170, 16
               

               Conread position:
               726-1091
               

               Cow position:
               
               

               Alignm length:
               387
               

               Alignm identity:
               255
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               48, 106
               

               Conread position:
               727-908
               

               Cow position:
               
               

               Alignm length:
               184
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               47, 151
               

               Conread position:
               739-980
               

               Cow position:
               
               

               Alignm length:
               246
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               35, 54
               

               Conread position:
               741-1026
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               218
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               32, 54
               

               Conread position:
               750-891
               

               Cow position:
               
               

               Alignm length:
               144
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               24, 67
               

               Conread position:
               750-927
               

               Cow position:
               
               

               Alignm length:
               180
               

               Alignm identity:
               148
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               24, 129
               

               Conread position:
               751-893
               

               Cow position:
               
               

               Alignm length:
               145
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               23, 127
               

               Conread position:
               752-978
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               23, 142
               

               Conread position:
               768-893
               

               Cow position:
               
               

               Alignm length:
               127
               

               Alignm identity:
               99
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               6, 99
               

               Conread position:
               789-902
               

               Cow position:
               
               

               Alignm length:
               115
               

               Alignm identity:
               94
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               37, 88
               

               Conread position:
               790-1042
               

               Cow position:
               
               

               Alignm length:
               262
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 88
               

               Conread position:
               825-1026
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               156
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               93, 26
               

               Conread position:
               828-979
               

               Cow position:
               
               

               Alignm length:
               152
               

               Alignm identity:
               117
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               829-980
               

               Cow position:
               
               

               Alignm length:
               152
               

               Alignm identity:
               117
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               829-1026
               

               Cow position:
               
               

               Alignm length:
               208
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               116, 49
               

               Conread position:
               829-1042
               

               Cow position:
               
               

               Alignm length:
               217
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               116, 49
               

               Conread position:
               844-976
               

               Cow position:
               
               

               Alignm length:
               135
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               16, 34
               

               Conread position:
               844-1027
               

               Cow position:
               
               

               Alignm length:
               185
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               101, 33
               

               Conread position:
               844-1058
               

               Cow position:
               
               

               Alignm length:
               221
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               101, 33
               

               Conread position:
               851-1051
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               94, 24
               

               Conread position:
               854-975
               

               Cow position:
               
               

               Alignm length:
               124
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               92, 23
               

               Conread position:
               1039-1265
               

               Cow position:
               
               

               Alignm length:
               232
               

               Alignm identity:
               168
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               12, 79
               

               Conread position:
               1041-1359
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               227
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               68, 24
               

               Conread position:
               1041-1364
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               225
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               13, 37
               

               Conread position:
               1042-1368
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               236
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               21, 94
               

               Conread position:
               1045-1280
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               64, 20
               

               Conread position:
               1047-1359
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               13, 228
               

               Conread position:
               1048-1361
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               219
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               19, 125
               

               Conread position:
               1048-1368
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               20, 69
               

               Conread position:
               1062-1360
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               214
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               51, 177
               

               Conread position:
               1114-1364
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               127, 72
               

               Conread position:
               1151-1364
               

               Cow position:
               
               

               Alignm length:
               221
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               42, 73
               
Show alignments to all cow chromosomes.